Mercurial > hg > orthanc-databases

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merged find-refactoring -> attach-custom-data
author Alain Mazy <am@orthanc.team>
date Tue, 24 Sep 2024 15:04:21 +0200
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children
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1 Database plugins for Orthanc
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2 ============================
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5 General information
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6 -------------------
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7
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8 This repository contains the source code of various database plugins
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9 for Orthanc, the lightweight, RESTful DICOM server. These plugins
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10 enable Orthanc to store its index and its storage area within
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11 well-known relational databases systems (RDBMS).
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14 Content
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15 -------
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17 * ./Framework/ : code shared by all the plugins
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18 * ./MySQL/ : index and storage plugins for MySQL and MariaDB
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19 * ./PostgreSQL/ : index and storage plugins for PostgreSQL
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20 * ./Odbc/ : index and storage plugins for Odbc
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21 * ./SQLite/ : index plugin for SQLite (for experimentation)
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22
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23 If you downloaded this project as a versioned release package
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24 (.tar.gz) focused on one given RDBMS, you will only find the folders
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25 that are related to this specific RDBMS. The full source code is
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26 available at:
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27 https://orthanc.uclouvain.be/hg/orthanc-databases/
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30 Compilation and usage
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31 ---------------------
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32
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33 The compilation and usage of the plugins is available in the Orthanc
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34 Book:
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35
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36 * MySQL/MariaDB : https://orthanc.uclouvain.be/book/plugins/mysql.html
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37 * PostgreSQL : https://orthanc.uclouvain.be/book/plugins/postgresql.html
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38 * ODBC : https://orthanc.uclouvain.be/book/plugins/odbc.html
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41 Older releases of PostgreSQL
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42 ----------------------------
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43
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44 This repository supersedes the older "orthanc-postgresql" repository
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45 that was only focused on PostgreSQL.
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46
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47 Releases <= 2.1 of the PostgreSQL plugins can still be found in the
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48 following legacy repository:
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49 https://orthanc.uclouvain.be/hg/orthanc-postgresql/
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51
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52 Contributing
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53 ------------
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54
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55 Instructions for contributing to the Orthanc project are included in
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56 the Orthanc Book:
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57 https://orthanc.uclouvain.be/book/developers/repositories.html
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60 Development
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61 -----------
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62
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63 PostgreSQL
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64 ==========
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65
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66 To quickly start a test PG server:
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67
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68 docker run -p 5432:5432 --rm --env POSTGRES_HOST_AUTH_METHOD=trust postgres:13.4
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69
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70 And use this Orthanc configuration:
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71 "PostgreSQL": {
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72 "EnableIndex": true,
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73 "EnableStorage": false, // DICOM files are stored in the Orthanc container in /var/lib/orthanc/db/
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74 "Host": "localhost", // the name of the PostgreSQL container
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75 "Database": "postgres", // default database name in PostgreSQL container (no need to create it)
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76 "Username": "postgres", // default user name in PostgreSQL container (no need to create it)
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77 "Password": "postgres"
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78 },
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79
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80 MySQL
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81 =====
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82
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83 To quickly start a test MySQL server:
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84
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85 docker run -p 3306:3306 --rm --env MYSQL_PASSWORD=orthanc --env MYSQL_USER=orthanc --env MYSQL_DATABASE=orthanc --env MYSQL_ROOT_PASSWORD=pwd-root mysql:8.0 mysqld --default-authentication-plugin=mysql_native_password --log-bin-trust-function-creators=1
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86
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87 And use this Orthanc configuration:
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88 "MySQL": {
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89 "EnableIndex": true,
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90 "EnableStorage": false,
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91 "Host": "localhost",
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92 "Database": "orthanc",
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93 "Username": "orthanc",
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94 "Password": "orthanc",
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95 "UnixSocket": ""
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96 },
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97
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98
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99 ODBC (SQL Server)
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100 =================
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101
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102 To quickly start a test MySQL server:
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103
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104 docker run -e "ACCEPT_EULA=Y" --rm --env "SA_PASSWORD=yourStrong-Password" --entrypoint=bash -it -p 1433:1433 mcr.microsoft.com/mssql/server:2019-latest
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105
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106 Then:
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107 (sleep 15s && /opt/mssql-tools/bin/sqlcmd -S localhost -U sa -P yourStrong-Password -Q 'CREATE DATABASE orthanctest') & /opt/mssql/bin/sqlservr
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108
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109 And use this Orthanc configuration:
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110 "Odbc" : {
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111 "IndexConnectionString": "Driver={ODBC Driver 17 for SQL Server};Server=tcp:localhost,1433;Database=orthanctest;Uid=sa;Pwd=yourStrong-Password;Encrypt=yes;TrustServerCertificate=yes;Connection Timeout=30;",
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112 "EnableIndex": true,
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113 "EnableStorage": false
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114 }
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115
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116
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117 SQLite
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118 ======
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119
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120 To quickly test the SQLite plugin, simply run orthanc and load the plugin (no configuration required).
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121
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122
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123 Licensing
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124 ---------
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125
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126 The database plugins for Orthanc are licensed under the AGPL license.
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127
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128 We also kindly ask scientific works and clinical studies that make
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129 use of Orthanc to cite Orthanc in their associated publications.
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130 Similarly, we ask open-source and closed-source products that make
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131 use of Orthanc to warn us about this use. You can cite our work
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132 using the following BibTeX entry:
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133
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134 @Article{Jodogne2018,
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135 author="Jodogne, S{\'e}bastien",
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136 title="The {O}rthanc Ecosystem for Medical Imaging",
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137 journal="Journal of Digital Imaging",
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138 year="2018",
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139 month="Jun",
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140 day="01",
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Sebastien Jodogne <s.jodogne@gmail.com>
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141 volume="31",
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Sebastien Jodogne <s.jodogne@gmail.com>
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142 number="3",
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Sebastien Jodogne <s.jodogne@gmail.com>
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143 pages="341--352",
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Sebastien Jodogne <s.jodogne@gmail.com>
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144 issn="1618-727X",
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Sebastien Jodogne <s.jodogne@gmail.com>
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145 doi="10.1007/s10278-018-0082-y",
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Sebastien Jodogne <s.jodogne@gmail.com>
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146 url="https://doi.org/10.1007/s10278-018-0082-y"
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Sebastien Jodogne <s.jodogne@gmail.com>
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147 }