Mercurial > hg > orthanc-databases
annotate Framework/Plugins/IndexBackend.cpp @ 193:3236894320d6
upgrade to year 2021
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Wed, 06 Jan 2021 17:40:27 +0100 |
| parents | 275e14f57f1e |
| children | 42990b2dd51b |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
| 4 * Department, University Hospital of Liege, Belgium | |
|
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 0 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU Affero General Public License | |
| 9 * as published by the Free Software Foundation, either version 3 of | |
| 10 * the License, or (at your option) any later version. | |
| 11 * | |
| 12 * This program is distributed in the hope that it will be useful, but | |
| 13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 15 * Affero General Public License for more details. | |
| 16 * | |
| 17 * You should have received a copy of the GNU Affero General Public License | |
| 18 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 19 **/ | |
| 20 | |
| 21 | |
| 22 #include "IndexBackend.h" | |
| 23 | |
| 152 | 24 #include "../../Resources/Orthanc/Databases/ISqlLookupFormatter.h" |
| 0 | 25 #include "../Common/BinaryStringValue.h" |
| 26 #include "../Common/Integer64Value.h" | |
| 27 #include "../Common/Utf8StringValue.h" | |
| 28 #include "GlobalProperties.h" | |
| 29 | |
|
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30 #include <Compatibility.h> // For std::unique_ptr<> |
| 152 | 31 #include <Logging.h> |
| 32 #include <OrthancException.h> | |
| 0 | 33 |
| 34 | |
| 35 namespace OrthancDatabases | |
| 36 { | |
| 37 static std::string ConvertWildcardToLike(const std::string& query) | |
| 38 { | |
| 39 std::string s = query; | |
| 40 | |
| 41 for (size_t i = 0; i < s.size(); i++) | |
| 42 { | |
| 43 if (s[i] == '*') | |
| 44 { | |
| 45 s[i] = '%'; | |
| 46 } | |
| 47 else if (s[i] == '?') | |
| 48 { | |
| 49 s[i] = '_'; | |
| 50 } | |
| 51 } | |
| 52 | |
| 65 | 53 // TODO Escape underscores and percents |
| 54 | |
| 0 | 55 return s; |
| 56 } | |
| 57 | |
| 58 | |
|
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59 int64_t IndexBackend::ReadInteger64(const DatabaseManager::StatementBase& statement, |
| 0 | 60 size_t field) |
| 61 { | |
| 62 if (statement.IsDone()) | |
| 63 { | |
| 64 throw Orthanc::OrthancException(Orthanc::ErrorCode_Database); | |
| 65 } | |
| 66 | |
| 67 const IValue& value = statement.GetResultField(field); | |
| 68 | |
| 69 switch (value.GetType()) | |
| 70 { | |
| 71 case ValueType_Integer64: | |
| 72 return dynamic_cast<const Integer64Value&>(value).GetValue(); | |
| 73 | |
| 74 default: | |
| 75 //LOG(ERROR) << value.Format(); | |
| 76 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
| 77 } | |
| 78 } | |
| 79 | |
| 80 | |
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81 int32_t IndexBackend::ReadInteger32(const DatabaseManager::StatementBase& statement, |
| 0 | 82 size_t field) |
| 83 { | |
| 84 if (statement.IsDone()) | |
| 85 { | |
| 86 throw Orthanc::OrthancException(Orthanc::ErrorCode_Database); | |
| 87 } | |
| 88 | |
| 89 int64_t value = ReadInteger64(statement, field); | |
| 90 | |
| 91 if (value != static_cast<int64_t>(static_cast<int32_t>(value))) | |
| 92 { | |
| 93 LOG(ERROR) << "Integer overflow"; | |
| 94 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
| 95 } | |
| 96 else | |
| 97 { | |
| 98 return static_cast<int32_t>(value); | |
| 99 } | |
| 100 } | |
| 101 | |
| 102 | |
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103 std::string IndexBackend::ReadString(const DatabaseManager::StatementBase& statement, |
| 0 | 104 size_t field) |
| 105 { | |
| 106 const IValue& value = statement.GetResultField(field); | |
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107 |
| 0 | 108 switch (value.GetType()) |
| 109 { | |
| 110 case ValueType_BinaryString: | |
| 111 return dynamic_cast<const BinaryStringValue&>(value).GetContent(); | |
| 112 | |
| 113 case ValueType_Utf8String: | |
| 114 return dynamic_cast<const Utf8StringValue&>(value).GetContent(); | |
| 115 | |
| 116 default: | |
| 117 //LOG(ERROR) << value.Format(); | |
| 118 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
| 119 } | |
| 120 } | |
| 121 | |
| 122 | |
| 123 template <typename T> | |
| 124 void IndexBackend::ReadListOfIntegers(std::list<T>& target, | |
| 125 DatabaseManager::CachedStatement& statement, | |
| 126 const Dictionary& args) | |
| 127 { | |
| 128 statement.Execute(args); | |
| 129 | |
| 130 target.clear(); | |
| 131 | |
| 132 if (!statement.IsDone()) | |
| 133 { | |
| 134 if (statement.GetResultFieldsCount() != 1) | |
| 135 { | |
| 136 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
| 137 } | |
| 138 | |
| 139 statement.SetResultFieldType(0, ValueType_Integer64); | |
| 140 | |
| 141 while (!statement.IsDone()) | |
| 142 { | |
| 143 target.push_back(static_cast<T>(ReadInteger64(statement, 0))); | |
| 144 statement.Next(); | |
| 145 } | |
| 146 } | |
| 147 } | |
| 148 | |
| 149 | |
| 150 void IndexBackend::ReadListOfStrings(std::list<std::string>& target, | |
| 151 DatabaseManager::CachedStatement& statement, | |
| 152 const Dictionary& args) | |
| 153 { | |
| 154 statement.Execute(args); | |
| 155 | |
| 156 target.clear(); | |
| 157 | |
| 158 if (!statement.IsDone()) | |
| 159 { | |
| 160 if (statement.GetResultFieldsCount() != 1) | |
| 161 { | |
| 162 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
| 163 } | |
| 164 | |
| 165 while (!statement.IsDone()) | |
| 166 { | |
| 167 target.push_back(ReadString(statement, 0)); | |
| 168 statement.Next(); | |
| 169 } | |
| 170 } | |
| 171 } | |
| 172 | |
| 173 | |
| 174 void IndexBackend::ReadChangesInternal(bool& done, | |
| 175 DatabaseManager::CachedStatement& statement, | |
| 176 const Dictionary& args, | |
| 177 uint32_t maxResults) | |
| 178 { | |
| 179 statement.Execute(args); | |
| 180 | |
| 181 uint32_t count = 0; | |
| 182 | |
| 183 while (count < maxResults && | |
| 184 !statement.IsDone()) | |
| 185 { | |
| 186 GetOutput().AnswerChange( | |
| 187 ReadInteger64(statement, 0), | |
| 188 ReadInteger32(statement, 1), | |
| 189 static_cast<OrthancPluginResourceType>(ReadInteger32(statement, 3)), | |
| 190 GetPublicId(ReadInteger64(statement, 2)), | |
| 191 ReadString(statement, 4)); | |
| 192 | |
| 193 statement.Next(); | |
| 194 count++; | |
| 195 } | |
| 196 | |
| 197 done = (count < maxResults || | |
| 198 statement.IsDone()); | |
| 199 } | |
| 200 | |
| 201 | |
| 202 void IndexBackend::ReadExportedResourcesInternal(bool& done, | |
| 203 DatabaseManager::CachedStatement& statement, | |
| 204 const Dictionary& args, | |
| 205 uint32_t maxResults) | |
| 206 { | |
| 207 statement.Execute(args); | |
| 208 | |
| 209 uint32_t count = 0; | |
| 210 | |
| 211 while (count < maxResults && | |
| 212 !statement.IsDone()) | |
| 213 { | |
| 214 int64_t seq = ReadInteger64(statement, 0); | |
| 215 OrthancPluginResourceType resourceType = | |
| 216 static_cast<OrthancPluginResourceType>(ReadInteger32(statement, 1)); | |
| 217 std::string publicId = ReadString(statement, 2); | |
| 218 | |
| 219 GetOutput().AnswerExportedResource(seq, | |
| 220 resourceType, | |
| 221 publicId, | |
| 222 ReadString(statement, 3), // modality | |
| 223 ReadString(statement, 8), // date | |
| 224 ReadString(statement, 4), // patient ID | |
| 225 ReadString(statement, 5), // study instance UID | |
| 226 ReadString(statement, 6), // series instance UID | |
| 227 ReadString(statement, 7)); // sop instance UID | |
| 228 | |
| 229 statement.Next(); | |
| 230 count++; | |
| 231 } | |
| 232 | |
| 233 done = (count < maxResults || | |
| 234 statement.IsDone()); | |
| 235 } | |
| 236 | |
| 237 | |
| 238 void IndexBackend::ClearDeletedFiles() | |
| 239 { | |
| 240 DatabaseManager::CachedStatement statement( | |
| 241 STATEMENT_FROM_HERE, manager_, | |
| 242 "DELETE FROM DeletedFiles"); | |
| 243 | |
| 244 statement.Execute(); | |
| 245 } | |
| 246 | |
| 247 | |
| 248 void IndexBackend::ClearDeletedResources() | |
| 249 { | |
| 250 DatabaseManager::CachedStatement statement( | |
| 251 STATEMENT_FROM_HERE, manager_, | |
| 252 "DELETE FROM DeletedResources"); | |
| 253 | |
| 254 statement.Execute(); | |
| 255 } | |
| 256 | |
| 257 | |
| 258 void IndexBackend::SignalDeletedFiles() | |
| 259 { | |
| 260 DatabaseManager::CachedStatement statement( | |
| 261 STATEMENT_FROM_HERE, manager_, | |
| 262 "SELECT * FROM DeletedFiles"); | |
| 263 | |
| 264 statement.SetReadOnly(true); | |
| 265 statement.Execute(); | |
| 266 | |
| 267 while (!statement.IsDone()) | |
| 268 { | |
| 269 std::string a = ReadString(statement, 0); | |
| 270 std::string b = ReadString(statement, 5); | |
| 271 std::string c = ReadString(statement, 6); | |
| 272 | |
| 273 GetOutput().SignalDeletedAttachment(a.c_str(), | |
| 274 ReadInteger32(statement, 1), | |
| 275 ReadInteger64(statement, 3), | |
| 276 b.c_str(), | |
| 277 ReadInteger32(statement, 4), | |
| 278 ReadInteger64(statement, 2), | |
| 279 c.c_str()); | |
| 280 | |
| 281 statement.Next(); | |
| 282 } | |
| 283 } | |
| 284 | |
| 285 | |
| 286 void IndexBackend::SignalDeletedResources() | |
| 287 { | |
| 288 DatabaseManager::CachedStatement statement( | |
| 289 STATEMENT_FROM_HERE, manager_, | |
| 290 "SELECT * FROM DeletedResources"); | |
| 291 | |
| 292 statement.SetReadOnly(true); | |
| 293 statement.Execute(); | |
| 294 | |
| 295 while (!statement.IsDone()) | |
| 296 { | |
| 297 GetOutput().SignalDeletedResource( | |
| 298 ReadString(statement, 1), | |
| 299 static_cast<OrthancPluginResourceType>(ReadInteger32(statement, 0))); | |
| 300 | |
| 301 statement.Next(); | |
| 302 } | |
| 303 } | |
| 304 | |
| 305 | |
| 306 IndexBackend::IndexBackend(IDatabaseFactory* factory) : | |
| 307 manager_(factory) | |
| 308 { | |
| 309 } | |
| 310 | |
| 311 | |
| 312 void IndexBackend::AddAttachment(int64_t id, | |
| 313 const OrthancPluginAttachment& attachment) | |
| 314 { | |
| 315 DatabaseManager::CachedStatement statement( | |
| 316 STATEMENT_FROM_HERE, manager_, | |
| 317 "INSERT INTO AttachedFiles VALUES(${id}, ${type}, ${uuid}, " | |
| 318 "${compressed}, ${uncompressed}, ${compression}, ${hash}, ${hash-compressed})"); | |
| 319 | |
| 320 statement.SetParameterType("id", ValueType_Integer64); | |
| 321 statement.SetParameterType("type", ValueType_Integer64); | |
| 322 statement.SetParameterType("uuid", ValueType_Utf8String); | |
| 323 statement.SetParameterType("compressed", ValueType_Integer64); | |
| 324 statement.SetParameterType("uncompressed", ValueType_Integer64); | |
| 325 statement.SetParameterType("compression", ValueType_Integer64); | |
| 326 statement.SetParameterType("hash", ValueType_Utf8String); | |
| 327 statement.SetParameterType("hash-compressed", ValueType_Utf8String); | |
| 328 | |
| 329 Dictionary args; | |
| 330 args.SetIntegerValue("id", id); | |
| 331 args.SetIntegerValue("type", attachment.contentType); | |
| 332 args.SetUtf8Value("uuid", attachment.uuid); | |
| 333 args.SetIntegerValue("compressed", attachment.compressedSize); | |
| 334 args.SetIntegerValue("uncompressed", attachment.uncompressedSize); | |
| 335 args.SetIntegerValue("compression", attachment.compressionType); | |
| 336 args.SetUtf8Value("hash", attachment.uncompressedHash); | |
| 337 args.SetUtf8Value("hash-compressed", attachment.compressedHash); | |
| 338 | |
| 339 statement.Execute(args); | |
| 340 } | |
| 341 | |
| 342 | |
| 343 void IndexBackend::AttachChild(int64_t parent, | |
| 344 int64_t child) | |
| 345 { | |
| 346 DatabaseManager::CachedStatement statement( | |
| 347 STATEMENT_FROM_HERE, manager_, | |
| 348 "UPDATE Resources SET parentId = ${parent} WHERE internalId = ${child}"); | |
| 349 | |
| 350 statement.SetParameterType("parent", ValueType_Integer64); | |
| 351 statement.SetParameterType("child", ValueType_Integer64); | |
| 352 | |
| 353 Dictionary args; | |
| 354 args.SetIntegerValue("parent", parent); | |
| 355 args.SetIntegerValue("child", child); | |
| 356 | |
| 357 statement.Execute(args); | |
| 358 } | |
| 359 | |
| 360 | |
| 361 void IndexBackend::ClearChanges() | |
| 362 { | |
| 363 DatabaseManager::CachedStatement statement( | |
| 364 STATEMENT_FROM_HERE, manager_, | |
| 365 "DELETE FROM Changes"); | |
| 366 | |
| 367 statement.Execute(); | |
| 368 } | |
| 369 | |
| 370 | |
| 371 void IndexBackend::ClearExportedResources() | |
| 372 { | |
| 373 DatabaseManager::CachedStatement statement( | |
| 374 STATEMENT_FROM_HERE, manager_, | |
| 375 "DELETE FROM ExportedResources"); | |
| 376 | |
| 377 statement.Execute(); | |
| 378 } | |
| 379 | |
| 380 | |
| 381 void IndexBackend::DeleteAttachment(int64_t id, | |
| 382 int32_t attachment) | |
| 383 { | |
| 384 ClearDeletedFiles(); | |
| 385 | |
| 386 { | |
| 387 DatabaseManager::CachedStatement statement( | |
| 388 STATEMENT_FROM_HERE, manager_, | |
| 389 "DELETE FROM AttachedFiles WHERE id=${id} AND fileType=${type}"); | |
| 390 | |
| 391 statement.SetParameterType("id", ValueType_Integer64); | |
| 392 statement.SetParameterType("type", ValueType_Integer64); | |
| 393 | |
| 394 Dictionary args; | |
| 395 args.SetIntegerValue("id", id); | |
| 396 args.SetIntegerValue("type", static_cast<int>(attachment)); | |
| 397 | |
| 398 statement.Execute(args); | |
| 399 } | |
| 400 | |
| 401 SignalDeletedFiles(); | |
| 402 } | |
| 403 | |
| 404 | |
| 405 void IndexBackend::DeleteMetadata(int64_t id, | |
| 406 int32_t metadataType) | |
| 407 { | |
| 408 DatabaseManager::CachedStatement statement( | |
| 409 STATEMENT_FROM_HERE, manager_, | |
| 410 "DELETE FROM Metadata WHERE id=${id} and type=${type}"); | |
| 411 | |
| 412 statement.SetParameterType("id", ValueType_Integer64); | |
| 413 statement.SetParameterType("type", ValueType_Integer64); | |
| 414 | |
| 415 Dictionary args; | |
| 416 args.SetIntegerValue("id", id); | |
| 417 args.SetIntegerValue("type", static_cast<int>(metadataType)); | |
| 418 | |
| 419 statement.Execute(args); | |
| 420 } | |
| 421 | |
| 422 | |
| 423 void IndexBackend::DeleteResource(int64_t id) | |
| 424 { | |
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425 assert(manager_.GetDialect() != Dialect_MySQL); |
| 0 | 426 |
| 427 ClearDeletedFiles(); | |
| 428 ClearDeletedResources(); | |
| 429 | |
| 430 { | |
| 431 DatabaseManager::CachedStatement statement( | |
| 432 STATEMENT_FROM_HERE, GetManager(), | |
| 433 "DELETE FROM RemainingAncestor"); | |
| 434 | |
| 435 statement.Execute(); | |
| 436 } | |
| 437 | |
| 438 { | |
| 439 DatabaseManager::CachedStatement statement( | |
| 440 STATEMENT_FROM_HERE, GetManager(), | |
| 441 "DELETE FROM Resources WHERE internalId=${id}"); | |
| 442 | |
| 443 statement.SetParameterType("id", ValueType_Integer64); | |
| 444 | |
| 445 Dictionary args; | |
| 446 args.SetIntegerValue("id", id); | |
| 447 | |
| 448 statement.Execute(args); | |
| 449 } | |
| 450 | |
| 451 | |
| 452 { | |
| 453 DatabaseManager::CachedStatement statement( | |
| 454 STATEMENT_FROM_HERE, GetManager(), | |
| 455 "SELECT * FROM RemainingAncestor"); | |
| 456 | |
| 457 statement.Execute(); | |
| 458 | |
| 459 if (!statement.IsDone()) | |
| 460 { | |
| 461 GetOutput().SignalRemainingAncestor( | |
| 462 ReadString(statement, 1), | |
| 463 static_cast<OrthancPluginResourceType>(ReadInteger32(statement, 0))); | |
| 464 | |
| 465 // There is at most 1 remaining ancestor | |
| 466 assert((statement.Next(), statement.IsDone())); | |
| 467 } | |
| 468 } | |
| 469 | |
| 470 SignalDeletedFiles(); | |
| 471 SignalDeletedResources(); | |
| 472 } | |
| 473 | |
| 474 | |
| 475 void IndexBackend::GetAllInternalIds(std::list<int64_t>& target, | |
| 476 OrthancPluginResourceType resourceType) | |
| 477 { | |
| 478 DatabaseManager::CachedStatement statement( | |
| 479 STATEMENT_FROM_HERE, manager_, | |
| 480 "SELECT internalId FROM Resources WHERE resourceType=${type}"); | |
| 481 | |
| 482 statement.SetReadOnly(true); | |
| 483 statement.SetParameterType("type", ValueType_Integer64); | |
| 484 | |
| 485 Dictionary args; | |
| 486 args.SetIntegerValue("type", static_cast<int>(resourceType)); | |
| 487 | |
| 488 ReadListOfIntegers<int64_t>(target, statement, args); | |
| 489 } | |
| 490 | |
| 491 | |
| 492 void IndexBackend::GetAllPublicIds(std::list<std::string>& target, | |
| 493 OrthancPluginResourceType resourceType) | |
| 494 { | |
| 495 DatabaseManager::CachedStatement statement( | |
| 496 STATEMENT_FROM_HERE, manager_, | |
| 497 "SELECT publicId FROM Resources WHERE resourceType=${type}"); | |
| 498 | |
| 499 statement.SetReadOnly(true); | |
| 500 statement.SetParameterType("type", ValueType_Integer64); | |
| 501 | |
| 502 Dictionary args; | |
| 503 args.SetIntegerValue("type", static_cast<int>(resourceType)); | |
| 504 | |
| 505 ReadListOfStrings(target, statement, args); | |
| 506 } | |
| 507 | |
| 508 | |
| 509 void IndexBackend::GetAllPublicIds(std::list<std::string>& target, | |
| 510 OrthancPluginResourceType resourceType, | |
| 511 uint64_t since, | |
| 512 uint64_t limit) | |
| 513 { | |
| 514 DatabaseManager::CachedStatement statement( | |
| 515 STATEMENT_FROM_HERE, manager_, | |
| 516 "SELECT publicId FROM (SELECT publicId FROM Resources " | |
| 517 "WHERE resourceType=${type}) AS tmp " | |
| 518 "ORDER BY tmp.publicId LIMIT ${limit} OFFSET ${since}"); | |
| 519 | |
| 520 statement.SetReadOnly(true); | |
| 521 statement.SetParameterType("type", ValueType_Integer64); | |
| 522 statement.SetParameterType("limit", ValueType_Integer64); | |
| 523 statement.SetParameterType("since", ValueType_Integer64); | |
| 524 | |
| 525 Dictionary args; | |
| 526 args.SetIntegerValue("type", static_cast<int>(resourceType)); | |
| 527 args.SetIntegerValue("limit", limit); | |
| 528 args.SetIntegerValue("since", since); | |
| 529 | |
| 530 ReadListOfStrings(target, statement, args); | |
| 531 } | |
| 532 | |
| 533 | |
| 534 /* Use GetOutput().AnswerChange() */ | |
| 535 void IndexBackend::GetChanges(bool& done /*out*/, | |
| 536 int64_t since, | |
| 537 uint32_t maxResults) | |
| 538 { | |
| 539 DatabaseManager::CachedStatement statement( | |
| 540 STATEMENT_FROM_HERE, manager_, | |
| 541 "SELECT * FROM Changes WHERE seq>${since} ORDER BY seq LIMIT ${limit}"); | |
| 542 | |
| 543 statement.SetReadOnly(true); | |
| 544 statement.SetParameterType("limit", ValueType_Integer64); | |
| 545 statement.SetParameterType("since", ValueType_Integer64); | |
| 546 | |
| 547 Dictionary args; | |
| 548 args.SetIntegerValue("limit", maxResults + 1); | |
| 549 args.SetIntegerValue("since", since); | |
| 550 | |
| 551 ReadChangesInternal(done, statement, args, maxResults); | |
| 552 } | |
| 553 | |
| 554 | |
| 555 void IndexBackend::GetChildrenInternalId(std::list<int64_t>& target /*out*/, | |
| 556 int64_t id) | |
| 557 { | |
| 558 DatabaseManager::CachedStatement statement( | |
| 559 STATEMENT_FROM_HERE, manager_, | |
| 560 "SELECT a.internalId FROM Resources AS a, Resources AS b " | |
| 561 "WHERE a.parentId = b.internalId AND b.internalId = ${id}"); | |
| 562 | |
| 563 statement.SetReadOnly(true); | |
| 564 statement.SetParameterType("id", ValueType_Integer64); | |
| 565 | |
| 566 Dictionary args; | |
| 567 args.SetIntegerValue("id", id); | |
| 568 | |
| 569 ReadListOfIntegers<int64_t>(target, statement, args); | |
| 570 } | |
| 571 | |
| 572 | |
| 573 void IndexBackend::GetChildrenPublicId(std::list<std::string>& target /*out*/, | |
| 574 int64_t id) | |
| 575 { | |
| 576 DatabaseManager::CachedStatement statement( | |
| 577 STATEMENT_FROM_HERE, manager_, | |
| 578 "SELECT a.publicId FROM Resources AS a, Resources AS b " | |
| 579 "WHERE a.parentId = b.internalId AND b.internalId = ${id}"); | |
| 580 | |
| 581 statement.SetReadOnly(true); | |
| 582 statement.SetParameterType("id", ValueType_Integer64); | |
| 583 | |
| 584 Dictionary args; | |
| 585 args.SetIntegerValue("id", id); | |
| 586 | |
| 587 ReadListOfStrings(target, statement, args); | |
| 588 } | |
| 589 | |
| 590 | |
| 591 /* Use GetOutput().AnswerExportedResource() */ | |
| 592 void IndexBackend::GetExportedResources(bool& done /*out*/, | |
| 593 int64_t since, | |
| 594 uint32_t maxResults) | |
| 595 { | |
| 596 DatabaseManager::CachedStatement statement( | |
| 597 STATEMENT_FROM_HERE, manager_, | |
| 598 "SELECT * FROM ExportedResources WHERE seq>${since} ORDER BY seq LIMIT ${limit}"); | |
| 599 | |
| 600 statement.SetReadOnly(true); | |
| 601 statement.SetParameterType("limit", ValueType_Integer64); | |
| 602 statement.SetParameterType("since", ValueType_Integer64); | |
| 603 | |
| 604 Dictionary args; | |
| 605 args.SetIntegerValue("limit", maxResults + 1); | |
| 606 args.SetIntegerValue("since", since); | |
| 607 | |
| 608 ReadExportedResourcesInternal(done, statement, args, maxResults); | |
| 609 } | |
| 610 | |
| 611 | |
| 612 /* Use GetOutput().AnswerChange() */ | |
| 613 void IndexBackend::GetLastChange() | |
| 614 { | |
| 615 DatabaseManager::CachedStatement statement( | |
| 616 STATEMENT_FROM_HERE, manager_, | |
| 617 "SELECT * FROM Changes ORDER BY seq DESC LIMIT 1"); | |
| 618 | |
| 619 statement.SetReadOnly(true); | |
| 620 | |
| 621 Dictionary args; | |
| 622 | |
| 623 bool done; // Ignored | |
| 624 ReadChangesInternal(done, statement, args, 1); | |
| 625 } | |
| 626 | |
| 627 | |
| 628 /* Use GetOutput().AnswerExportedResource() */ | |
| 629 void IndexBackend::GetLastExportedResource() | |
| 630 { | |
| 631 DatabaseManager::CachedStatement statement( | |
| 632 STATEMENT_FROM_HERE, manager_, | |
| 633 "SELECT * FROM ExportedResources ORDER BY seq DESC LIMIT 1"); | |
| 634 | |
| 635 statement.SetReadOnly(true); | |
| 636 | |
| 637 Dictionary args; | |
| 638 | |
| 639 bool done; // Ignored | |
| 640 ReadExportedResourcesInternal(done, statement, args, 1); | |
| 641 } | |
| 642 | |
| 643 | |
| 644 /* Use GetOutput().AnswerDicomTag() */ | |
| 645 void IndexBackend::GetMainDicomTags(int64_t id) | |
| 646 { | |
| 647 DatabaseManager::CachedStatement statement( | |
| 648 STATEMENT_FROM_HERE, manager_, | |
| 649 "SELECT * FROM MainDicomTags WHERE id=${id}"); | |
| 650 | |
| 651 statement.SetReadOnly(true); | |
| 652 statement.SetParameterType("id", ValueType_Integer64); | |
| 653 | |
| 654 Dictionary args; | |
| 655 args.SetIntegerValue("id", id); | |
| 656 | |
| 657 statement.Execute(args); | |
| 658 | |
| 659 while (!statement.IsDone()) | |
| 660 { | |
| 661 GetOutput().AnswerDicomTag(static_cast<uint16_t>(ReadInteger64(statement, 1)), | |
| 662 static_cast<uint16_t>(ReadInteger64(statement, 2)), | |
| 663 ReadString(statement, 3)); | |
| 664 statement.Next(); | |
| 665 } | |
| 666 } | |
| 667 | |
| 668 | |
| 669 std::string IndexBackend::GetPublicId(int64_t resourceId) | |
| 670 { | |
| 671 DatabaseManager::CachedStatement statement( | |
| 672 STATEMENT_FROM_HERE, manager_, | |
| 673 "SELECT publicId FROM Resources WHERE internalId=${id}"); | |
| 674 | |
| 675 statement.SetReadOnly(true); | |
| 676 statement.SetParameterType("id", ValueType_Integer64); | |
| 677 | |
| 678 Dictionary args; | |
| 679 args.SetIntegerValue("id", resourceId); | |
| 680 | |
| 681 statement.Execute(args); | |
| 682 | |
| 683 if (statement.IsDone()) | |
| 684 { | |
| 685 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); | |
| 686 } | |
| 687 else | |
| 688 { | |
| 689 return ReadString(statement, 0); | |
| 690 } | |
| 691 } | |
| 692 | |
| 693 | |
| 694 uint64_t IndexBackend::GetResourceCount(OrthancPluginResourceType resourceType) | |
| 695 { | |
|
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696 std::unique_ptr<DatabaseManager::CachedStatement> statement; |
| 0 | 697 |
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698 switch (manager_.GetDialect()) |
| 0 | 699 { |
| 700 case Dialect_MySQL: | |
| 701 statement.reset(new DatabaseManager::CachedStatement( | |
| 702 STATEMENT_FROM_HERE, GetManager(), | |
| 703 "SELECT CAST(COUNT(*) AS UNSIGNED INT) FROM Resources WHERE resourceType=${type}")); | |
| 704 break; | |
| 705 | |
| 706 case Dialect_PostgreSQL: | |
| 707 statement.reset(new DatabaseManager::CachedStatement( | |
|
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708 STATEMENT_FROM_HERE, GetManager(), |
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709 "SELECT CAST(COUNT(*) AS BIGINT) FROM Resources WHERE resourceType=${type}")); |
| 0 | 710 break; |
| 711 | |
| 712 case Dialect_SQLite: | |
| 713 statement.reset(new DatabaseManager::CachedStatement( | |
|
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714 STATEMENT_FROM_HERE, GetManager(), |
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715 "SELECT COUNT(*) FROM Resources WHERE resourceType=${type}")); |
| 0 | 716 break; |
| 717 | |
| 718 default: | |
| 719 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); | |
| 720 } | |
| 721 | |
| 722 statement->SetReadOnly(true); | |
| 723 statement->SetParameterType("type", ValueType_Integer64); | |
| 724 | |
| 725 Dictionary args; | |
| 726 args.SetIntegerValue("type", resourceType); | |
| 727 | |
| 728 statement->Execute(args); | |
| 729 | |
| 730 return static_cast<uint64_t>(ReadInteger64(*statement, 0)); | |
| 731 } | |
| 732 | |
| 733 | |
| 734 OrthancPluginResourceType IndexBackend::GetResourceType(int64_t resourceId) | |
| 735 { | |
| 736 DatabaseManager::CachedStatement statement( | |
| 737 STATEMENT_FROM_HERE, manager_, | |
| 738 "SELECT resourceType FROM Resources WHERE internalId=${id}"); | |
| 739 | |
| 740 statement.SetReadOnly(true); | |
| 741 statement.SetParameterType("id", ValueType_Integer64); | |
| 742 | |
| 743 Dictionary args; | |
| 744 args.SetIntegerValue("id", resourceId); | |
| 745 | |
| 746 statement.Execute(args); | |
| 747 | |
| 748 if (statement.IsDone()) | |
| 749 { | |
| 750 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); | |
| 751 } | |
| 752 else | |
| 753 { | |
| 754 return static_cast<OrthancPluginResourceType>(ReadInteger32(statement, 0)); | |
| 755 } | |
| 756 } | |
| 757 | |
| 758 | |
| 759 uint64_t IndexBackend::GetTotalCompressedSize() | |
| 760 { | |
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761 std::unique_ptr<DatabaseManager::CachedStatement> statement; |
| 0 | 762 |
| 763 // NB: "COALESCE" is used to replace "NULL" by "0" if the number of rows is empty | |
| 764 | |
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765 switch (manager_.GetDialect()) |
| 0 | 766 { |
| 767 case Dialect_MySQL: | |
| 768 statement.reset(new DatabaseManager::CachedStatement( | |
| 769 STATEMENT_FROM_HERE, GetManager(), | |
| 770 "SELECT CAST(COALESCE(SUM(compressedSize), 0) AS UNSIGNED INTEGER) FROM AttachedFiles")); | |
| 771 break; | |
| 772 | |
| 773 case Dialect_PostgreSQL: | |
| 774 statement.reset(new DatabaseManager::CachedStatement( | |
| 775 STATEMENT_FROM_HERE, GetManager(), | |
| 776 "SELECT CAST(COALESCE(SUM(compressedSize), 0) AS BIGINT) FROM AttachedFiles")); | |
| 777 break; | |
| 778 | |
| 779 case Dialect_SQLite: | |
| 780 statement.reset(new DatabaseManager::CachedStatement( | |
| 781 STATEMENT_FROM_HERE, GetManager(), | |
| 782 "SELECT COALESCE(SUM(compressedSize), 0) FROM AttachedFiles")); | |
| 783 break; | |
| 784 | |
| 785 default: | |
| 786 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); | |
| 787 } | |
| 788 | |
| 789 statement->SetReadOnly(true); | |
| 790 statement->Execute(); | |
| 791 | |
| 792 return static_cast<uint64_t>(ReadInteger64(*statement, 0)); | |
| 793 } | |
| 794 | |
| 795 | |
| 796 uint64_t IndexBackend::GetTotalUncompressedSize() | |
| 797 { | |
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798 std::unique_ptr<DatabaseManager::CachedStatement> statement; |
| 0 | 799 |
| 800 // NB: "COALESCE" is used to replace "NULL" by "0" if the number of rows is empty | |
| 801 | |
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802 switch (manager_.GetDialect()) |
| 0 | 803 { |
| 804 case Dialect_MySQL: | |
| 805 statement.reset(new DatabaseManager::CachedStatement( | |
| 806 STATEMENT_FROM_HERE, GetManager(), | |
| 807 "SELECT CAST(COALESCE(SUM(uncompressedSize), 0) AS UNSIGNED INTEGER) FROM AttachedFiles")); | |
| 808 break; | |
| 809 | |
| 810 case Dialect_PostgreSQL: | |
| 811 statement.reset(new DatabaseManager::CachedStatement( | |
| 812 STATEMENT_FROM_HERE, GetManager(), | |
| 813 "SELECT CAST(COALESCE(SUM(uncompressedSize), 0) AS BIGINT) FROM AttachedFiles")); | |
| 814 break; | |
| 815 | |
| 816 case Dialect_SQLite: | |
| 817 statement.reset(new DatabaseManager::CachedStatement( | |
| 818 STATEMENT_FROM_HERE, GetManager(), | |
| 819 "SELECT COALESCE(SUM(uncompressedSize), 0) FROM AttachedFiles")); | |
| 820 break; | |
| 821 | |
| 822 default: | |
| 823 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); | |
| 824 } | |
| 825 | |
| 826 statement->SetReadOnly(true); | |
| 827 statement->Execute(); | |
| 828 | |
| 829 return static_cast<uint64_t>(ReadInteger64(*statement, 0)); | |
| 830 } | |
| 831 | |
| 832 | |
| 833 bool IndexBackend::IsExistingResource(int64_t internalId) | |
| 834 { | |
| 835 DatabaseManager::CachedStatement statement( | |
| 836 STATEMENT_FROM_HERE, manager_, | |
| 837 "SELECT * FROM Resources WHERE internalId=${id}"); | |
| 838 | |
| 839 statement.SetReadOnly(true); | |
| 840 statement.SetParameterType("id", ValueType_Integer64); | |
| 841 | |
| 842 Dictionary args; | |
| 843 args.SetIntegerValue("id", internalId); | |
| 844 | |
| 845 statement.Execute(args); | |
| 846 | |
| 847 return !statement.IsDone(); | |
| 848 } | |
| 849 | |
| 850 | |
| 851 bool IndexBackend::IsProtectedPatient(int64_t internalId) | |
| 852 { | |
| 853 DatabaseManager::CachedStatement statement( | |
| 854 STATEMENT_FROM_HERE, manager_, | |
| 855 "SELECT * FROM PatientRecyclingOrder WHERE patientId = ${id}"); | |
| 856 | |
| 857 statement.SetReadOnly(true); | |
| 858 statement.SetParameterType("id", ValueType_Integer64); | |
| 859 | |
| 860 Dictionary args; | |
| 861 args.SetIntegerValue("id", internalId); | |
| 862 | |
| 863 statement.Execute(args); | |
| 864 | |
| 865 return statement.IsDone(); | |
| 866 } | |
| 867 | |
| 868 | |
| 869 void IndexBackend::ListAvailableMetadata(std::list<int32_t>& target /*out*/, | |
| 870 int64_t id) | |
| 871 { | |
| 872 DatabaseManager::CachedStatement statement( | |
| 873 STATEMENT_FROM_HERE, manager_, | |
| 874 "SELECT type FROM Metadata WHERE id=${id}"); | |
| 875 | |
| 876 statement.SetReadOnly(true); | |
| 877 statement.SetParameterType("id", ValueType_Integer64); | |
| 878 | |
| 879 Dictionary args; | |
| 880 args.SetIntegerValue("id", id); | |
| 881 | |
| 882 ReadListOfIntegers<int32_t>(target, statement, args); | |
| 883 } | |
| 884 | |
| 885 | |
| 886 void IndexBackend::ListAvailableAttachments(std::list<int32_t>& target /*out*/, | |
| 887 int64_t id) | |
| 888 { | |
| 889 DatabaseManager::CachedStatement statement( | |
| 890 STATEMENT_FROM_HERE, manager_, | |
| 891 "SELECT fileType FROM AttachedFiles WHERE id=${id}"); | |
| 892 | |
| 893 statement.SetReadOnly(true); | |
| 894 statement.SetParameterType("id", ValueType_Integer64); | |
| 895 | |
| 896 Dictionary args; | |
| 897 args.SetIntegerValue("id", id); | |
| 898 | |
| 899 ReadListOfIntegers<int32_t>(target, statement, args); | |
| 900 } | |
| 901 | |
| 902 | |
| 903 void IndexBackend::LogChange(const OrthancPluginChange& change) | |
| 904 { | |
| 905 int64_t id; | |
| 906 OrthancPluginResourceType type; | |
| 907 if (!LookupResource(id, type, change.publicId) || | |
| 908 type != change.resourceType) | |
| 909 { | |
| 910 throw Orthanc::OrthancException(Orthanc::ErrorCode_Database); | |
| 911 } | |
| 912 | |
| 913 DatabaseManager::CachedStatement statement( | |
| 914 STATEMENT_FROM_HERE, manager_, | |
| 915 "INSERT INTO Changes VALUES(${}, ${changeType}, ${id}, ${resourceType}, ${date})"); | |
| 916 | |
| 917 statement.SetParameterType("changeType", ValueType_Integer64); | |
| 918 statement.SetParameterType("id", ValueType_Integer64); | |
| 919 statement.SetParameterType("resourceType", ValueType_Integer64); | |
| 920 statement.SetParameterType("date", ValueType_Utf8String); | |
| 921 | |
| 922 Dictionary args; | |
| 923 args.SetIntegerValue("changeType", change.changeType); | |
| 924 args.SetIntegerValue("id", id); | |
| 925 args.SetIntegerValue("resourceType", change.resourceType); | |
| 926 args.SetUtf8Value("date", change.date); | |
| 927 | |
| 928 statement.Execute(args); | |
| 929 } | |
| 930 | |
| 931 | |
| 932 void IndexBackend::LogExportedResource(const OrthancPluginExportedResource& resource) | |
| 933 { | |
| 934 DatabaseManager::CachedStatement statement( | |
| 935 STATEMENT_FROM_HERE, manager_, | |
| 936 "INSERT INTO ExportedResources VALUES(${}, ${type}, ${publicId}, " | |
| 937 "${modality}, ${patient}, ${study}, ${series}, ${instance}, ${date})"); | |
| 938 | |
| 939 statement.SetParameterType("type", ValueType_Integer64); | |
| 940 statement.SetParameterType("publicId", ValueType_Utf8String); | |
| 941 statement.SetParameterType("modality", ValueType_Utf8String); | |
| 942 statement.SetParameterType("patient", ValueType_Utf8String); | |
| 943 statement.SetParameterType("study", ValueType_Utf8String); | |
| 944 statement.SetParameterType("series", ValueType_Utf8String); | |
| 945 statement.SetParameterType("instance", ValueType_Utf8String); | |
| 946 statement.SetParameterType("date", ValueType_Utf8String); | |
| 947 | |
| 948 Dictionary args; | |
| 949 args.SetIntegerValue("type", resource.resourceType); | |
| 950 args.SetUtf8Value("publicId", resource.publicId); | |
| 951 args.SetUtf8Value("modality", resource.modality); | |
| 952 args.SetUtf8Value("patient", resource.patientId); | |
| 953 args.SetUtf8Value("study", resource.studyInstanceUid); | |
| 954 args.SetUtf8Value("series", resource.seriesInstanceUid); | |
| 955 args.SetUtf8Value("instance", resource.sopInstanceUid); | |
| 956 args.SetUtf8Value("date", resource.date); | |
| 957 | |
| 958 statement.Execute(args); | |
| 959 } | |
| 960 | |
| 961 | |
| 962 /* Use GetOutput().AnswerAttachment() */ | |
| 963 bool IndexBackend::LookupAttachment(int64_t id, | |
| 964 int32_t contentType) | |
| 965 { | |
| 966 DatabaseManager::CachedStatement statement( | |
| 967 STATEMENT_FROM_HERE, manager_, | |
| 968 "SELECT uuid, uncompressedSize, compressionType, compressedSize, " | |
| 969 "uncompressedHash, compressedHash FROM AttachedFiles WHERE id=${id} AND fileType=${type}"); | |
| 970 | |
| 971 statement.SetReadOnly(true); | |
| 972 statement.SetParameterType("id", ValueType_Integer64); | |
| 973 statement.SetParameterType("type", ValueType_Integer64); | |
| 974 | |
| 975 Dictionary args; | |
| 976 args.SetIntegerValue("id", id); | |
| 977 args.SetIntegerValue("type", static_cast<int>(contentType)); | |
| 978 | |
| 979 statement.Execute(args); | |
| 980 | |
| 981 if (statement.IsDone()) | |
| 982 { | |
| 983 return false; | |
| 984 } | |
| 985 else | |
| 986 { | |
| 987 GetOutput().AnswerAttachment(ReadString(statement, 0), | |
| 988 contentType, | |
| 989 ReadInteger64(statement, 1), | |
| 990 ReadString(statement, 4), | |
| 991 ReadInteger32(statement, 2), | |
| 992 ReadInteger64(statement, 3), | |
| 993 ReadString(statement, 5)); | |
| 994 return true; | |
| 995 } | |
| 996 } | |
| 997 | |
| 998 | |
| 999 bool IndexBackend::LookupGlobalProperty(std::string& target /*out*/, | |
| 1000 int32_t property) | |
| 1001 { | |
| 1002 return ::OrthancDatabases::LookupGlobalProperty(target, manager_, static_cast<Orthanc::GlobalProperty>(property)); | |
| 1003 } | |
| 1004 | |
| 1005 | |
| 1006 void IndexBackend::LookupIdentifier(std::list<int64_t>& target /*out*/, | |
| 1007 OrthancPluginResourceType resourceType, | |
| 1008 uint16_t group, | |
| 1009 uint16_t element, | |
| 1010 OrthancPluginIdentifierConstraint constraint, | |
| 1011 const char* value) | |
| 1012 { | |
|
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1013 std::unique_ptr<DatabaseManager::CachedStatement> statement; |
| 0 | 1014 |
| 1015 std::string header = | |
| 1016 "SELECT d.id FROM DicomIdentifiers AS d, Resources AS r WHERE " | |
| 1017 "d.id = r.internalId AND r.resourceType=${type} AND d.tagGroup=${group} " | |
| 1018 "AND d.tagElement=${element} AND "; | |
| 1019 | |
| 1020 switch (constraint) | |
| 1021 { | |
| 1022 case OrthancPluginIdentifierConstraint_Equal: | |
| 1023 header += "d.value = ${value}"; | |
| 1024 statement.reset(new DatabaseManager::CachedStatement( | |
| 1025 STATEMENT_FROM_HERE, manager_, header.c_str())); | |
| 1026 break; | |
| 1027 | |
| 1028 case OrthancPluginIdentifierConstraint_SmallerOrEqual: | |
| 1029 header += "d.value <= ${value}"; | |
| 1030 statement.reset(new DatabaseManager::CachedStatement( | |
| 1031 STATEMENT_FROM_HERE, manager_, header.c_str())); | |
| 1032 break; | |
| 1033 | |
| 1034 case OrthancPluginIdentifierConstraint_GreaterOrEqual: | |
| 1035 header += "d.value >= ${value}"; | |
| 1036 statement.reset(new DatabaseManager::CachedStatement( | |
| 1037 STATEMENT_FROM_HERE, manager_, header.c_str())); | |
| 1038 break; | |
| 1039 | |
| 1040 case OrthancPluginIdentifierConstraint_Wildcard: | |
| 1041 header += "d.value LIKE ${value}"; | |
| 1042 statement.reset(new DatabaseManager::CachedStatement( | |
| 1043 STATEMENT_FROM_HERE, manager_, header.c_str())); | |
| 1044 break; | |
| 1045 | |
| 1046 default: | |
| 1047 throw Orthanc::OrthancException(Orthanc::ErrorCode_Database); | |
| 1048 } | |
| 1049 | |
| 1050 statement->SetReadOnly(true); | |
| 1051 statement->SetParameterType("type", ValueType_Integer64); | |
| 1052 statement->SetParameterType("group", ValueType_Integer64); | |
| 1053 statement->SetParameterType("element", ValueType_Integer64); | |
| 1054 statement->SetParameterType("value", ValueType_Utf8String); | |
| 1055 | |
| 1056 Dictionary args; | |
| 1057 args.SetIntegerValue("type", resourceType); | |
| 1058 args.SetIntegerValue("group", group); | |
| 1059 args.SetIntegerValue("element", element); | |
| 1060 | |
| 1061 if (constraint == OrthancPluginIdentifierConstraint_Wildcard) | |
| 1062 { | |
| 1063 args.SetUtf8Value("value", ConvertWildcardToLike(value)); | |
| 1064 } | |
| 1065 else | |
| 1066 { | |
| 1067 args.SetUtf8Value("value", value); | |
| 1068 } | |
| 1069 | |
| 1070 statement->Execute(args); | |
| 1071 | |
| 1072 target.clear(); | |
| 1073 while (!statement->IsDone()) | |
| 1074 { | |
| 1075 target.push_back(ReadInteger64(*statement, 0)); | |
| 1076 statement->Next(); | |
| 1077 } | |
| 1078 } | |
| 1079 | |
| 1080 | |
| 1081 void IndexBackend::LookupIdentifierRange(std::list<int64_t>& target /*out*/, | |
| 1082 OrthancPluginResourceType resourceType, | |
| 1083 uint16_t group, | |
| 1084 uint16_t element, | |
| 1085 const char* start, | |
| 1086 const char* end) | |
| 1087 { | |
| 1088 DatabaseManager::CachedStatement statement( | |
| 1089 STATEMENT_FROM_HERE, manager_, | |
| 1090 "SELECT d.id FROM DicomIdentifiers AS d, Resources AS r WHERE " | |
| 1091 "d.id = r.internalId AND r.resourceType=${type} AND d.tagGroup=${group} " | |
| 1092 "AND d.tagElement=${element} AND d.value>=${start} AND d.value<=${end}"); | |
| 1093 | |
| 1094 statement.SetReadOnly(true); | |
| 1095 statement.SetParameterType("type", ValueType_Integer64); | |
| 1096 statement.SetParameterType("group", ValueType_Integer64); | |
| 1097 statement.SetParameterType("element", ValueType_Integer64); | |
| 1098 statement.SetParameterType("start", ValueType_Utf8String); | |
| 1099 statement.SetParameterType("end", ValueType_Utf8String); | |
| 1100 | |
| 1101 Dictionary args; | |
| 1102 args.SetIntegerValue("type", resourceType); | |
| 1103 args.SetIntegerValue("group", group); | |
| 1104 args.SetIntegerValue("element", element); | |
| 1105 args.SetUtf8Value("start", start); | |
| 1106 args.SetUtf8Value("end", end); | |
| 1107 | |
| 1108 statement.Execute(args); | |
| 1109 | |
| 1110 target.clear(); | |
| 1111 while (!statement.IsDone()) | |
| 1112 { | |
| 1113 target.push_back(ReadInteger64(statement, 0)); | |
| 1114 statement.Next(); | |
| 1115 } | |
| 1116 } | |
| 1117 | |
| 1118 | |
| 1119 bool IndexBackend::LookupMetadata(std::string& target /*out*/, | |
| 1120 int64_t id, | |
| 1121 int32_t metadataType) | |
| 1122 { | |
| 1123 DatabaseManager::CachedStatement statement( | |
| 1124 STATEMENT_FROM_HERE, manager_, | |
| 1125 "SELECT value FROM Metadata WHERE id=${id} and type=${type}"); | |
| 1126 | |
| 1127 statement.SetReadOnly(true); | |
| 1128 statement.SetParameterType("id", ValueType_Integer64); | |
| 1129 statement.SetParameterType("type", ValueType_Integer64); | |
| 1130 | |
| 1131 Dictionary args; | |
| 1132 args.SetIntegerValue("id", id); | |
| 1133 args.SetIntegerValue("type", metadataType); | |
| 1134 | |
| 1135 statement.Execute(args); | |
| 1136 | |
| 1137 if (statement.IsDone()) | |
| 1138 { | |
| 1139 return false; | |
| 1140 } | |
| 1141 else | |
| 1142 { | |
| 1143 target = ReadString(statement, 0); | |
| 1144 return true; | |
| 1145 } | |
| 1146 } | |
| 1147 | |
| 1148 | |
| 1149 bool IndexBackend::LookupParent(int64_t& parentId /*out*/, | |
| 1150 int64_t resourceId) | |
| 1151 { | |
| 1152 DatabaseManager::CachedStatement statement( | |
| 1153 STATEMENT_FROM_HERE, manager_, | |
| 1154 "SELECT parentId FROM Resources WHERE internalId=${id}"); | |
| 1155 | |
| 1156 statement.SetReadOnly(true); | |
| 1157 statement.SetParameterType("id", ValueType_Integer64); | |
| 1158 | |
| 1159 Dictionary args; | |
| 1160 args.SetIntegerValue("id", resourceId); | |
| 1161 | |
| 1162 statement.Execute(args); | |
| 1163 | |
| 1164 if (statement.IsDone() || | |
| 1165 statement.GetResultField(0).GetType() == ValueType_Null) | |
| 1166 { | |
| 1167 return false; | |
| 1168 } | |
| 1169 else | |
| 1170 { | |
| 1171 parentId = ReadInteger64(statement, 0); | |
| 1172 return true; | |
| 1173 } | |
| 1174 } | |
| 1175 | |
| 1176 | |
| 1177 bool IndexBackend::LookupResource(int64_t& id /*out*/, | |
| 1178 OrthancPluginResourceType& type /*out*/, | |
| 1179 const char* publicId) | |
| 1180 { | |
| 1181 DatabaseManager::CachedStatement statement( | |
| 1182 STATEMENT_FROM_HERE, manager_, | |
| 1183 "SELECT internalId, resourceType FROM Resources WHERE publicId=${id}"); | |
| 1184 | |
| 1185 statement.SetReadOnly(true); | |
| 1186 statement.SetParameterType("id", ValueType_Utf8String); | |
| 1187 | |
| 1188 Dictionary args; | |
| 1189 args.SetUtf8Value("id", publicId); | |
| 1190 | |
| 1191 statement.Execute(args); | |
| 1192 | |
| 1193 if (statement.IsDone()) | |
| 1194 { | |
| 1195 return false; | |
| 1196 } | |
| 1197 else | |
| 1198 { | |
| 1199 id = ReadInteger64(statement, 0); | |
| 1200 type = static_cast<OrthancPluginResourceType>(ReadInteger32(statement, 1)); | |
| 1201 return true; | |
| 1202 } | |
| 1203 } | |
| 1204 | |
| 1205 | |
| 1206 bool IndexBackend::SelectPatientToRecycle(int64_t& internalId /*out*/) | |
| 1207 { | |
| 1208 DatabaseManager::CachedStatement statement( | |
| 1209 STATEMENT_FROM_HERE, manager_, | |
| 1210 "SELECT patientId FROM PatientRecyclingOrder ORDER BY seq ASC LIMIT 1"); | |
| 1211 | |
| 1212 statement.SetReadOnly(true); | |
| 1213 statement.Execute(); | |
| 1214 | |
| 1215 if (statement.IsDone()) | |
| 1216 { | |
| 1217 return false; | |
| 1218 } | |
| 1219 else | |
| 1220 { | |
| 1221 internalId = ReadInteger64(statement, 0); | |
| 1222 return true; | |
| 1223 } | |
| 1224 } | |
| 1225 | |
| 1226 | |
| 1227 bool IndexBackend::SelectPatientToRecycle(int64_t& internalId /*out*/, | |
| 1228 int64_t patientIdToAvoid) | |
| 1229 { | |
| 1230 DatabaseManager::CachedStatement statement( | |
| 1231 STATEMENT_FROM_HERE, manager_, | |
| 1232 "SELECT patientId FROM PatientRecyclingOrder " | |
| 1233 "WHERE patientId != ${id} ORDER BY seq ASC LIMIT 1"); | |
| 1234 | |
| 1235 statement.SetReadOnly(true); | |
| 1236 statement.SetParameterType("id", ValueType_Integer64); | |
| 1237 | |
| 1238 Dictionary args; | |
| 1239 args.SetIntegerValue("id", patientIdToAvoid); | |
| 1240 | |
| 1241 statement.Execute(args); | |
| 1242 | |
| 1243 if (statement.IsDone()) | |
| 1244 { | |
| 1245 return false; | |
| 1246 } | |
| 1247 else | |
| 1248 { | |
| 1249 internalId = ReadInteger64(statement, 0); | |
| 1250 return true; | |
| 1251 } | |
| 1252 } | |
| 1253 | |
| 1254 | |
| 1255 void IndexBackend::SetGlobalProperty(int32_t property, | |
| 1256 const char* value) | |
| 1257 { | |
| 1258 return ::OrthancDatabases::SetGlobalProperty(manager_, static_cast<Orthanc::GlobalProperty>(property), value); | |
| 1259 } | |
| 1260 | |
| 1261 | |
| 1262 static void ExecuteSetTag(DatabaseManager::CachedStatement& statement, | |
| 1263 int64_t id, | |
| 1264 uint16_t group, | |
| 1265 uint16_t element, | |
| 1266 const char* value) | |
| 1267 { | |
| 1268 statement.SetParameterType("id", ValueType_Integer64); | |
| 1269 statement.SetParameterType("group", ValueType_Integer64); | |
| 1270 statement.SetParameterType("element", ValueType_Integer64); | |
| 1271 statement.SetParameterType("value", ValueType_Utf8String); | |
| 1272 | |
| 1273 Dictionary args; | |
| 1274 args.SetIntegerValue("id", id); | |
| 1275 args.SetIntegerValue("group", group); | |
| 1276 args.SetIntegerValue("element", element); | |
| 1277 args.SetUtf8Value("value", value); | |
| 1278 | |
| 1279 statement.Execute(args); | |
| 1280 } | |
| 1281 | |
| 1282 | |
| 1283 void IndexBackend::SetMainDicomTag(int64_t id, | |
| 1284 uint16_t group, | |
| 1285 uint16_t element, | |
| 1286 const char* value) | |
| 1287 { | |
| 1288 DatabaseManager::CachedStatement statement( | |
| 1289 STATEMENT_FROM_HERE, manager_, | |
| 1290 "INSERT INTO MainDicomTags VALUES(${id}, ${group}, ${element}, ${value})"); | |
| 1291 | |
| 1292 ExecuteSetTag(statement, id, group, element, value); | |
| 1293 } | |
| 1294 | |
| 1295 | |
| 1296 void IndexBackend::SetIdentifierTag(int64_t id, | |
| 1297 uint16_t group, | |
| 1298 uint16_t element, | |
| 1299 const char* value) | |
| 1300 { | |
| 1301 DatabaseManager::CachedStatement statement( | |
| 1302 STATEMENT_FROM_HERE, manager_, | |
| 1303 "INSERT INTO DicomIdentifiers VALUES(${id}, ${group}, ${element}, ${value})"); | |
| 1304 | |
| 1305 ExecuteSetTag(statement, id, group, element, value); | |
| 1306 } | |
| 1307 | |
| 1308 | |
| 1309 void IndexBackend::SetMetadata(int64_t id, | |
| 1310 int32_t metadataType, | |
| 1311 const char* value) | |
| 1312 { | |
|
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1313 if (manager_.GetDialect() == Dialect_SQLite) |
| 0 | 1314 { |
| 1315 DatabaseManager::CachedStatement statement( | |
| 1316 STATEMENT_FROM_HERE, manager_, | |
| 1317 "INSERT OR REPLACE INTO Metadata VALUES (${id}, ${type}, ${value})"); | |
| 1318 | |
| 1319 statement.SetParameterType("id", ValueType_Integer64); | |
| 1320 statement.SetParameterType("type", ValueType_Integer64); | |
| 1321 statement.SetParameterType("value", ValueType_Utf8String); | |
| 1322 | |
| 1323 Dictionary args; | |
| 1324 args.SetIntegerValue("id", id); | |
| 1325 args.SetIntegerValue("type", metadataType); | |
| 1326 args.SetUtf8Value("value", value); | |
| 1327 | |
| 1328 statement.Execute(args); | |
| 1329 } | |
| 1330 else | |
| 1331 { | |
| 1332 { | |
| 1333 DatabaseManager::CachedStatement statement( | |
| 1334 STATEMENT_FROM_HERE, manager_, | |
| 1335 "DELETE FROM Metadata WHERE id=${id} AND type=${type}"); | |
| 1336 | |
| 1337 statement.SetParameterType("id", ValueType_Integer64); | |
| 1338 statement.SetParameterType("type", ValueType_Integer64); | |
| 1339 | |
| 1340 Dictionary args; | |
| 1341 args.SetIntegerValue("id", id); | |
| 1342 args.SetIntegerValue("type", metadataType); | |
| 1343 | |
| 1344 statement.Execute(args); | |
| 1345 } | |
| 1346 | |
| 1347 { | |
| 1348 DatabaseManager::CachedStatement statement( | |
| 1349 STATEMENT_FROM_HERE, manager_, | |
| 1350 "INSERT INTO Metadata VALUES (${id}, ${type}, ${value})"); | |
| 1351 | |
| 1352 statement.SetParameterType("id", ValueType_Integer64); | |
| 1353 statement.SetParameterType("type", ValueType_Integer64); | |
| 1354 statement.SetParameterType("value", ValueType_Utf8String); | |
| 1355 | |
| 1356 Dictionary args; | |
| 1357 args.SetIntegerValue("id", id); | |
| 1358 args.SetIntegerValue("type", metadataType); | |
| 1359 args.SetUtf8Value("value", value); | |
| 1360 | |
| 1361 statement.Execute(args); | |
| 1362 } | |
| 1363 } | |
| 1364 } | |
| 1365 | |
| 1366 | |
| 1367 void IndexBackend::SetProtectedPatient(int64_t internalId, | |
| 1368 bool isProtected) | |
| 1369 { | |
| 1370 if (isProtected) | |
| 1371 { | |
| 1372 DatabaseManager::CachedStatement statement( | |
| 1373 STATEMENT_FROM_HERE, manager_, | |
| 1374 "DELETE FROM PatientRecyclingOrder WHERE patientId=${id}"); | |
| 1375 | |
| 1376 statement.SetParameterType("id", ValueType_Integer64); | |
| 1377 | |
| 1378 Dictionary args; | |
| 1379 args.SetIntegerValue("id", internalId); | |
| 1380 | |
| 1381 statement.Execute(args); | |
| 1382 } | |
| 1383 else if (IsProtectedPatient(internalId)) | |
| 1384 { | |
| 1385 DatabaseManager::CachedStatement statement( | |
| 1386 STATEMENT_FROM_HERE, manager_, | |
| 1387 "INSERT INTO PatientRecyclingOrder VALUES(${}, ${id})"); | |
| 1388 | |
| 1389 statement.SetParameterType("id", ValueType_Integer64); | |
| 1390 | |
| 1391 Dictionary args; | |
| 1392 args.SetIntegerValue("id", internalId); | |
| 1393 | |
| 1394 statement.Execute(args); | |
| 1395 } | |
| 1396 else | |
| 1397 { | |
| 1398 // Nothing to do: The patient is already unprotected | |
| 1399 } | |
| 1400 } | |
| 1401 | |
| 1402 | |
| 1403 uint32_t IndexBackend::GetDatabaseVersion() | |
| 1404 { | |
| 1405 std::string version = "unknown"; | |
| 1406 | |
| 1407 if (LookupGlobalProperty(version, Orthanc::GlobalProperty_DatabaseSchemaVersion)) | |
| 1408 { | |
| 1409 try | |
| 1410 { | |
| 1411 return boost::lexical_cast<unsigned int>(version); | |
| 1412 } | |
| 1413 catch (boost::bad_lexical_cast&) | |
| 1414 { | |
| 1415 } | |
| 1416 } | |
| 1417 | |
| 1418 LOG(ERROR) << "The database is corrupted. Drop it manually for Orthanc to recreate it"; | |
| 1419 throw Orthanc::OrthancException(Orthanc::ErrorCode_Database); | |
| 1420 } | |
| 1421 | |
| 1422 | |
| 1423 /** | |
| 1424 * Upgrade the database to the specified version of the database | |
| 1425 * schema. The upgrade script is allowed to make calls to | |
| 1426 * OrthancPluginReconstructMainDicomTags(). | |
| 1427 **/ | |
| 1428 void IndexBackend::UpgradeDatabase(uint32_t targetVersion, | |
| 1429 OrthancPluginStorageArea* storageArea) | |
| 1430 { | |
| 1431 LOG(ERROR) << "Upgrading database is not implemented by this plugin"; | |
| 1432 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); | |
| 1433 } | |
| 1434 | |
| 1435 | |
| 1436 void IndexBackend::ClearMainDicomTags(int64_t internalId) | |
| 1437 { | |
| 1438 { | |
| 1439 DatabaseManager::CachedStatement statement( | |
| 1440 STATEMENT_FROM_HERE, manager_, | |
| 1441 "DELETE FROM MainDicomTags WHERE id=${id}"); | |
| 1442 | |
| 1443 statement.SetParameterType("id", ValueType_Integer64); | |
| 1444 | |
| 1445 Dictionary args; | |
| 1446 args.SetIntegerValue("id", internalId); | |
| 1447 | |
| 1448 statement.Execute(args); | |
| 1449 } | |
| 1450 | |
| 1451 { | |
| 1452 DatabaseManager::CachedStatement statement( | |
| 1453 STATEMENT_FROM_HERE, manager_, | |
| 1454 "DELETE FROM DicomIdentifiers WHERE id=${id}"); | |
| 1455 | |
| 1456 statement.SetParameterType("id", ValueType_Integer64); | |
| 1457 | |
| 1458 Dictionary args; | |
| 1459 args.SetIntegerValue("id", internalId); | |
| 1460 | |
| 1461 statement.Execute(args); | |
| 1462 } | |
| 1463 } | |
| 1464 | |
| 1465 | |
| 1466 // For unit testing only! | |
| 1467 uint64_t IndexBackend::GetResourcesCount() | |
| 1468 { | |
|
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1469 std::unique_ptr<DatabaseManager::CachedStatement> statement; |
| 0 | 1470 |
|
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1471 switch (manager_.GetDialect()) |
| 0 | 1472 { |
| 1473 case Dialect_MySQL: | |
| 1474 statement.reset(new DatabaseManager::CachedStatement( | |
| 1475 STATEMENT_FROM_HERE, GetManager(), | |
| 1476 "SELECT CAST(COUNT(*) AS UNSIGNED INT) FROM Resources")); | |
| 1477 break; | |
| 1478 | |
| 1479 case Dialect_PostgreSQL: | |
| 1480 statement.reset(new DatabaseManager::CachedStatement( | |
| 1481 STATEMENT_FROM_HERE, GetManager(), | |
| 1482 "SELECT CAST(COUNT(*) AS BIGINT) FROM Resources")); | |
| 1483 break; | |
| 1484 | |
| 1485 case Dialect_SQLite: | |
| 1486 statement.reset(new DatabaseManager::CachedStatement( | |
| 1487 STATEMENT_FROM_HERE, GetManager(), | |
| 1488 "SELECT COUNT(*) FROM Resources")); | |
| 1489 break; | |
| 1490 | |
| 1491 default: | |
| 1492 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); | |
| 1493 } | |
| 1494 | |
| 1495 statement->SetReadOnly(true); | |
| 1496 statement->Execute(); | |
| 1497 | |
| 1498 return static_cast<uint64_t>(ReadInteger64(*statement, 0)); | |
| 1499 } | |
| 1500 | |
| 1501 | |
| 1502 // For unit testing only! | |
| 1503 uint64_t IndexBackend::GetUnprotectedPatientsCount() | |
| 1504 { | |
|
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1505 std::unique_ptr<DatabaseManager::CachedStatement> statement; |
| 0 | 1506 |
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1507 switch (manager_.GetDialect()) |
| 0 | 1508 { |
| 1509 case Dialect_MySQL: | |
| 1510 statement.reset(new DatabaseManager::CachedStatement( | |
| 1511 STATEMENT_FROM_HERE, GetManager(), | |
| 1512 "SELECT CAST(COUNT(*) AS UNSIGNED INT) FROM PatientRecyclingOrder")); | |
| 1513 break; | |
| 1514 | |
| 1515 case Dialect_PostgreSQL: | |
| 1516 statement.reset(new DatabaseManager::CachedStatement( | |
| 1517 STATEMENT_FROM_HERE, GetManager(), | |
| 1518 "SELECT CAST(COUNT(*) AS BIGINT) FROM PatientRecyclingOrder")); | |
| 1519 break; | |
| 1520 | |
| 1521 case Dialect_SQLite: | |
| 1522 statement.reset(new DatabaseManager::CachedStatement( | |
| 1523 STATEMENT_FROM_HERE, GetManager(), | |
| 1524 "SELECT COUNT(*) FROM PatientRecyclingOrder")); | |
| 1525 break; | |
| 1526 | |
| 1527 default: | |
| 1528 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); | |
| 1529 } | |
| 1530 | |
| 1531 statement->SetReadOnly(true); | |
| 1532 statement->Execute(); | |
| 1533 | |
| 1534 return static_cast<uint64_t>(ReadInteger64(*statement, 0)); | |
| 1535 } | |
| 1536 | |
| 1537 | |
| 1538 // For unit testing only! | |
| 1539 bool IndexBackend::GetParentPublicId(std::string& target, | |
| 1540 int64_t id) | |
| 1541 { | |
| 1542 DatabaseManager::CachedStatement statement( | |
| 1543 STATEMENT_FROM_HERE, GetManager(), | |
| 1544 "SELECT a.publicId FROM Resources AS a, Resources AS b " | |
| 1545 "WHERE a.internalId = b.parentId AND b.internalId = ${id}"); | |
| 1546 | |
| 1547 statement.SetReadOnly(true); | |
| 1548 statement.SetParameterType("id", ValueType_Integer64); | |
| 1549 | |
| 1550 Dictionary args; | |
| 1551 args.SetIntegerValue("id", id); | |
| 1552 | |
| 1553 statement.Execute(args); | |
| 1554 | |
| 1555 if (statement.IsDone()) | |
| 1556 { | |
| 1557 return false; | |
| 1558 } | |
| 1559 else | |
| 1560 { | |
| 1561 target = ReadString(statement, 0); | |
| 1562 return true; | |
| 1563 } | |
| 1564 } | |
| 1565 | |
| 1566 | |
| 1567 // For unit tests only! | |
| 1568 void IndexBackend::GetChildren(std::list<std::string>& childrenPublicIds, | |
| 1569 int64_t id) | |
| 1570 { | |
| 1571 DatabaseManager::CachedStatement statement( | |
| 1572 STATEMENT_FROM_HERE, GetManager(), | |
| 1573 "SELECT publicId FROM Resources WHERE parentId=${id}"); | |
| 1574 | |
| 1575 statement.SetReadOnly(true); | |
| 1576 statement.SetParameterType("id", ValueType_Integer64); | |
| 1577 | |
| 1578 Dictionary args; | |
| 1579 args.SetIntegerValue("id", id); | |
| 1580 | |
| 1581 ReadListOfStrings(childrenPublicIds, statement, args); | |
| 1582 } | |
|
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1583 |
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1584 |
| 78 | 1585 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1 |
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1586 class IndexBackend::LookupFormatter : public Orthanc::ISqlLookupFormatter |
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1587 { |
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1588 private: |
|
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1589 Dialect dialect_; |
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1590 size_t count_; |
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1591 Dictionary dictionary_; |
|
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1592 |
|
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1593 static std::string FormatParameter(size_t index) |
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1594 { |
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1595 return "p" + boost::lexical_cast<std::string>(index); |
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1596 } |
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1597 |
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1598 public: |
|
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1599 LookupFormatter(Dialect dialect) : |
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1600 dialect_(dialect), |
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1601 count_(0) |
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1602 { |
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1603 } |
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1604 |
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1605 virtual std::string GenerateParameter(const std::string& value) |
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1606 { |
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1607 const std::string key = FormatParameter(count_); |
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1608 |
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1609 count_ ++; |
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1610 dictionary_.SetUtf8Value(key, value); |
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1611 |
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1612 return "${" + key + "}"; |
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1613 } |
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1614 |
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1615 virtual std::string FormatResourceType(Orthanc::ResourceType level) |
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1616 { |
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1617 return boost::lexical_cast<std::string>(Orthanc::Plugins::Convert(level)); |
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1618 } |
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1619 |
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1620 virtual std::string FormatWildcardEscape() |
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1621 { |
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1622 switch (dialect_) |
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1623 { |
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1624 case Dialect_SQLite: |
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1625 case Dialect_PostgreSQL: |
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1626 return "ESCAPE '\\'"; |
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1627 |
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1628 case Dialect_MySQL: |
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1629 return "ESCAPE '\\\\'"; |
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1630 |
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1631 default: |
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1632 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); |
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1633 } |
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1634 } |
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1635 |
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1636 void PrepareStatement(DatabaseManager::StandaloneStatement& statement) const |
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1637 { |
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1638 statement.SetReadOnly(true); |
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1639 |
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1640 for (size_t i = 0; i < count_; i++) |
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1641 { |
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1642 statement.SetParameterType(FormatParameter(i), ValueType_Utf8String); |
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1643 } |
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1644 } |
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1645 |
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1646 const Dictionary& GetDictionary() const |
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1647 { |
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1648 return dictionary_; |
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1649 } |
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1650 }; |
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1651 #endif |
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1652 |
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1653 |
| 78 | 1654 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1 |
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1655 // New primitive since Orthanc 1.5.2 |
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1656 void IndexBackend::LookupResources(const std::vector<Orthanc::DatabaseConstraint>& lookup, |
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1657 OrthancPluginResourceType queryLevel, |
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1658 uint32_t limit, |
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1659 bool requestSomeInstance) |
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1660 { |
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1661 LookupFormatter formatter(manager_.GetDialect()); |
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1662 |
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1663 std::string sql; |
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1664 Orthanc::ISqlLookupFormatter::Apply(sql, formatter, lookup, |
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1665 Orthanc::Plugins::Convert(queryLevel), limit); |
|
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1666 |
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1667 if (requestSomeInstance) |
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1668 { |
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1669 // Composite query to find some instance if requested |
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1670 switch (queryLevel) |
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1671 { |
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1672 case OrthancPluginResourceType_Patient: |
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1673 sql = ("SELECT patients.publicId, MIN(instances.publicId) FROM (" + sql + ") patients " |
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1674 "INNER JOIN Resources studies ON studies.parentId = patients.internalId " |
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|
1675 "INNER JOIN Resources series ON series.parentId = studies.internalId " |
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|
1676 "INNER JOIN Resources instances ON instances.parentId = series.internalId " |
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|
1677 "GROUP BY patients.publicId"); |
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|
1678 break; |
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|
1679 |
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|
1680 case OrthancPluginResourceType_Study: |
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1681 sql = ("SELECT studies.publicId, MIN(instances.publicId) FROM (" + sql + ") studies " |
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|
1682 "INNER JOIN Resources series ON series.parentId = studies.internalId " |
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|
1683 "INNER JOIN Resources instances ON instances.parentId = series.internalId " |
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|
1684 "GROUP BY studies.publicId"); |
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|
1685 break; |
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|
1686 |
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|
1687 case OrthancPluginResourceType_Series: |
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1688 sql = ("SELECT series.publicId, MIN(instances.publicId) FROM (" + sql + ") series " |
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|
1689 "INNER JOIN Resources instances ON instances.parentId = series.internalId " |
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|
1690 "GROUP BY series.publicId"); |
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1691 break; |
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1692 |
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|
1693 case OrthancPluginResourceType_Instance: |
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1694 sql = ("SELECT instances.publicId, instances.publicId FROM (" + sql + ") instances"); |
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1695 break; |
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1696 |
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|
1697 default: |
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1698 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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1699 } |
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1700 } |
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1701 |
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1702 DatabaseManager::StandaloneStatement statement(GetManager(), sql); |
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1703 formatter.PrepareStatement(statement); |
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1704 |
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1705 statement.Execute(formatter.GetDictionary()); |
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1706 |
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|
1707 while (!statement.IsDone()) |
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|
1708 { |
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|
1709 if (requestSomeInstance) |
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|
1710 { |
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|
1711 GetOutput().AnswerMatchingResource(ReadString(statement, 0), ReadString(statement, 1)); |
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1712 } |
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1713 else |
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|
1714 { |
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|
1715 GetOutput().AnswerMatchingResource(ReadString(statement, 0)); |
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1716 } |
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1717 |
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|
1718 statement.Next(); |
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1719 } |
|
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1720 } |
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1721 #endif |
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1722 |
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1723 |
| 78 | 1724 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1 |
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1725 static void ExecuteSetResourcesContentTags( |
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1726 DatabaseManager& manager, |
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1727 const std::string& table, |
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1728 const std::string& variablePrefix, |
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1729 uint32_t count, |
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1730 const OrthancPluginResourcesContentTags* tags) |
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1731 { |
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1732 std::string sql; |
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1733 Dictionary args; |
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1734 |
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1735 for (uint32_t i = 0; i < count; i++) |
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1736 { |
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1737 std::string name = variablePrefix + boost::lexical_cast<std::string>(i); |
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1738 |
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1739 args.SetUtf8Value(name, tags[i].value); |
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1740 |
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1741 std::string insert = ("(" + boost::lexical_cast<std::string>(tags[i].resource) + ", " + |
|
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1742 boost::lexical_cast<std::string>(tags[i].group) + ", " + |
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1743 boost::lexical_cast<std::string>(tags[i].element) + ", " + |
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1744 "${" + name + "})"); |
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1745 |
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1746 if (sql.empty()) |
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1747 { |
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1748 sql = "INSERT INTO " + table + " VALUES " + insert; |
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1749 } |
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1750 else |
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1751 { |
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1752 sql += ", " + insert; |
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1753 } |
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1754 } |
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1755 |
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1756 if (!sql.empty()) |
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1757 { |
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1758 DatabaseManager::StandaloneStatement statement(manager, sql); |
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1759 |
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1760 for (uint32_t i = 0; i < count; i++) |
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1761 { |
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1762 statement.SetParameterType(variablePrefix + boost::lexical_cast<std::string>(i), |
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1763 ValueType_Utf8String); |
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1764 } |
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1765 |
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|
1766 statement.Execute(args); |
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1767 } |
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1768 } |
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1769 #endif |
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1770 |
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1771 |
| 78 | 1772 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1 |
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1773 static void ExecuteSetResourcesContentMetadata( |
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1774 DatabaseManager& manager, |
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1775 uint32_t count, |
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1776 const OrthancPluginResourcesContentMetadata* metadata) |
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1777 { |
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1778 std::string sqlRemove; // To overwrite |
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1779 std::string sqlInsert; |
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1780 Dictionary args; |
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1781 |
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1782 for (uint32_t i = 0; i < count; i++) |
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1783 { |
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1784 std::string name = "m" + boost::lexical_cast<std::string>(i); |
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1785 |
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1786 args.SetUtf8Value(name, metadata[i].value); |
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1787 |
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1788 std::string insert = ("(" + boost::lexical_cast<std::string>(metadata[i].resource) + ", " + |
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1789 boost::lexical_cast<std::string>(metadata[i].metadata) + ", " + |
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1790 "${" + name + "})"); |
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1791 |
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1792 std::string remove = ("(id=" + boost::lexical_cast<std::string>(metadata[i].resource) + |
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1793 " AND type=" + boost::lexical_cast<std::string>(metadata[i].metadata) |
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1794 + ")"); |
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1795 |
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1796 if (sqlInsert.empty()) |
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1797 { |
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1798 sqlInsert = "INSERT INTO Metadata VALUES " + insert; |
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1799 } |
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1800 else |
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1801 { |
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1802 sqlInsert += ", " + insert; |
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1803 } |
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1804 |
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1805 if (sqlRemove.empty()) |
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1806 { |
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1807 sqlRemove = "DELETE FROM Metadata WHERE " + remove; |
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1808 } |
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1809 else |
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1810 { |
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1811 sqlRemove += " OR " + remove; |
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1812 } |
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1813 } |
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1814 |
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1815 if (!sqlRemove.empty()) |
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1816 { |
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1817 DatabaseManager::StandaloneStatement statement(manager, sqlRemove); |
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1818 statement.Execute(); |
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1819 } |
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1820 |
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1821 if (!sqlInsert.empty()) |
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1822 { |
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1823 DatabaseManager::StandaloneStatement statement(manager, sqlInsert); |
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1824 |
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1825 for (uint32_t i = 0; i < count; i++) |
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1826 { |
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1827 statement.SetParameterType("m" + boost::lexical_cast<std::string>(i), |
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1828 ValueType_Utf8String); |
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1829 } |
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1830 |
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1831 statement.Execute(args); |
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1832 } |
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1833 } |
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1834 #endif |
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1835 |
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1836 |
| 78 | 1837 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1 |
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1838 // New primitive since Orthanc 1.5.2 |
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1839 void IndexBackend::SetResourcesContent( |
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1840 uint32_t countIdentifierTags, |
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1841 const OrthancPluginResourcesContentTags* identifierTags, |
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1842 uint32_t countMainDicomTags, |
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1843 const OrthancPluginResourcesContentTags* mainDicomTags, |
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1844 uint32_t countMetadata, |
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1845 const OrthancPluginResourcesContentMetadata* metadata) |
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1846 { |
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1847 /** |
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1848 * TODO - PostgreSQL doesn't allow multiple commands in a prepared |
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1849 * statement, so we execute 3 separate commands (for identifiers, |
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1850 * main tags and metadata). Maybe MySQL does not suffer from the |
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1851 * same limitation, to check. |
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1852 **/ |
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1853 |
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1854 ExecuteSetResourcesContentTags(GetManager(), "DicomIdentifiers", "i", |
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1855 countIdentifierTags, identifierTags); |
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1856 |
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1857 ExecuteSetResourcesContentTags(GetManager(), "MainDicomTags", "t", |
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1858 countMainDicomTags, mainDicomTags); |
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1859 |
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1860 ExecuteSetResourcesContentMetadata(GetManager(), countMetadata, metadata); |
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1861 } |
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1862 #endif |
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1863 |
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1864 |
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1865 // New primitive since Orthanc 1.5.2 |
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1866 void IndexBackend::GetChildrenMetadata(std::list<std::string>& target, |
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1867 int64_t resourceId, |
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1868 int32_t metadata) |
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1869 { |
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1870 DatabaseManager::CachedStatement statement( |
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1871 STATEMENT_FROM_HERE, manager_, |
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1872 "SELECT value FROM Metadata WHERE type=${metadata} AND " |
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1873 "id IN (SELECT internalId FROM Resources WHERE parentId=${id})"); |
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1874 |
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1875 statement.SetReadOnly(true); |
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1876 statement.SetParameterType("id", ValueType_Integer64); |
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1877 statement.SetParameterType("metadata", ValueType_Integer64); |
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1878 |
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1879 Dictionary args; |
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1880 args.SetIntegerValue("id", static_cast<int>(resourceId)); |
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1881 args.SetIntegerValue("metadata", static_cast<int>(metadata)); |
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1882 |
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1883 ReadListOfStrings(target, statement, args); |
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1884 } |
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1885 |
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1886 |
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1887 // New primitive since Orthanc 1.5.2 |
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1888 void IndexBackend::TagMostRecentPatient(int64_t patient) |
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1889 { |
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1890 int64_t seq; |
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1891 |
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1892 { |
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1893 DatabaseManager::CachedStatement statement( |
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1894 STATEMENT_FROM_HERE, manager_, |
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1895 "SELECT * FROM PatientRecyclingOrder WHERE seq >= " |
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1896 "(SELECT seq FROM PatientRecyclingOrder WHERE patientid=${id}) ORDER BY seq LIMIT 2"); |
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1897 |
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1898 statement.SetReadOnly(true); |
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1899 statement.SetParameterType("id", ValueType_Integer64); |
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1900 |
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1901 Dictionary args; |
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1902 args.SetIntegerValue("id", patient); |
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1903 |
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1904 statement.Execute(args); |
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1905 |
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1906 if (statement.IsDone()) |
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1907 { |
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1908 // The patient is protected, don't add it to the recycling order |
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1909 return; |
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1910 } |
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1911 |
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1912 seq = ReadInteger64(statement, 0); |
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1913 |
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1914 statement.Next(); |
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1915 |
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1916 if (statement.IsDone()) |
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1917 { |
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1918 // The patient is already at the end of the recycling order |
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1919 // (because of the "LIMIT 2" above), no need to modify the table |
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1920 return; |
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1921 } |
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1922 } |
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1923 |
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1924 // Delete the old position of the patient in the recycling order |
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1925 |
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1926 { |
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1927 DatabaseManager::CachedStatement statement( |
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1928 STATEMENT_FROM_HERE, manager_, |
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1929 "DELETE FROM PatientRecyclingOrder WHERE seq=${seq}"); |
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1930 |
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1931 statement.SetParameterType("seq", ValueType_Integer64); |
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1932 |
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1933 Dictionary args; |
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1934 args.SetIntegerValue("seq", seq); |
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1935 |
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1936 statement.Execute(args); |
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1937 } |
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1938 |
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1939 // Add the patient to the end of the recycling order |
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1940 |
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1941 { |
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1942 DatabaseManager::CachedStatement statement( |
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1943 STATEMENT_FROM_HERE, manager_, |
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1944 "INSERT INTO PatientRecyclingOrder VALUES(${}, ${id})"); |
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1945 |
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1946 statement.SetParameterType("id", ValueType_Integer64); |
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1947 |
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1948 Dictionary args; |
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1949 args.SetIntegerValue("id", patient); |
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1950 |
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1951 statement.Execute(args); |
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1952 } |
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1953 } |
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1954 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1955 |
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1956 #if defined(ORTHANC_PLUGINS_VERSION_IS_ABOVE) // Macro introduced in 1.3.1 |
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1957 # if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 5, 4) |
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1958 // New primitive since Orthanc 1.5.4 |
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1959 bool IndexBackend::LookupResourceAndParent(int64_t& id, |
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1960 OrthancPluginResourceType& type, |
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1961 std::string& parentPublicId, |
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1962 const char* publicId) |
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1963 { |
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1964 DatabaseManager::CachedStatement statement( |
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1965 STATEMENT_FROM_HERE, manager_, |
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1966 "SELECT resource.internalId, resource.resourceType, parent.publicId " |
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1967 "FROM Resources AS resource LEFT JOIN Resources parent ON parent.internalId=resource.parentId " |
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1968 "WHERE resource.publicId=${id}"); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1969 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1970 statement.SetParameterType("id", ValueType_Utf8String); |
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1971 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1972 Dictionary args; |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1973 args.SetUtf8Value("id", publicId); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1974 |
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1975 statement.Execute(args); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1976 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1977 if (statement.IsDone()) |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1978 { |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1979 return false; |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1980 } |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1981 else |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1982 { |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1983 if (statement.GetResultFieldsCount() != 3) |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1984 { |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1985 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1986 } |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1987 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1988 statement.SetResultFieldType(0, ValueType_Integer64); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1989 statement.SetResultFieldType(1, ValueType_Integer64); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1990 statement.SetResultFieldType(2, ValueType_Utf8String); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1991 |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1992 id = ReadInteger64(statement, 0); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1993 type = static_cast<OrthancPluginResourceType>(ReadInteger32(statement, 1)); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1994 |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1995 const IValue& value = statement.GetResultField(2); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1996 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1997 switch (value.GetType()) |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1998 { |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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1999 case ValueType_Null: |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2000 parentPublicId.clear(); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2001 break; |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2002 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2003 case ValueType_Utf8String: |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2004 parentPublicId = dynamic_cast<const Utf8StringValue&>(value).GetContent(); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2005 break; |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2006 |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2007 default: |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2008 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2009 } |
|
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2010 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2011 assert((statement.Next(), statement.IsDone())); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2012 return true; |
|
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2013 } |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2014 } |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2015 # endif |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2016 #endif |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2017 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2018 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2019 #if defined(ORTHANC_PLUGINS_VERSION_IS_ABOVE) // Macro introduced in 1.3.1 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2020 # if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 5, 4) |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2021 // New primitive since Orthanc 1.5.4 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2022 void IndexBackend::GetAllMetadata(std::map<int32_t, std::string>& result, |
|
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2023 int64_t id) |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2024 { |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2025 DatabaseManager::CachedStatement statement( |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2026 STATEMENT_FROM_HERE, manager_, |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2027 "SELECT type, value FROM Metadata WHERE id=${id}"); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2028 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2029 statement.SetReadOnly(true); |
|
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2030 statement.SetParameterType("id", ValueType_Integer64); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2031 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2032 Dictionary args; |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2033 args.SetIntegerValue("id", id); |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2034 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2035 statement.Execute(args); |
|
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2036 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2037 result.clear(); |
|
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2038 |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2039 if (!statement.IsDone()) |
|
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2040 { |
|
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2041 if (statement.GetResultFieldsCount() != 2) |
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2042 { |
|
ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2043 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
|
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2044 } |
|
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Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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2045 |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
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|
2046 statement.SetResultFieldType(0, ValueType_Integer64); |
|
ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
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2047 statement.SetResultFieldType(1, ValueType_Utf8String); |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2048 |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
88
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2049 while (!statement.IsDone()) |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
88
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2050 { |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
88
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2051 result[ReadInteger32(statement, 0)] = ReadString(statement, 1); |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
88
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2052 statement.Next(); |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2053 } |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2054 } |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
88
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2055 } |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2056 # endif |
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ca0ecd412988
Implementation of new extensions: LookupResourceAndParent and GetAllMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2057 #endif |
| 0 | 2058 } |