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precisions about tcia
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 09 Sep 2021 13:15:14 +0200
parents e9da78572539
children 815f70009ec2
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769:48f158c9ecb2 770:9978fb958ee2
4 TCIA plugin 4 TCIA plugin
5 =========== 5 ===========
6 6
7 .. contents:: 7 .. contents::
8 8
9 This **official** plugin extends Orthanc with a Web interface that can 9 This **official** plugin by the `ICTEAM institute of UCLouvain
10 be used to import open-data medical images from `The Cancer Imaging 10 <https://uclouvain.be/en/research-institutes/icteam>`__ extends
11 Archive (TCIA) <https://www.cancerimagingarchive.net/>`__, and serve 11 Orthanc with a Web interface that can be used to import open-data
12 them immediately using Orthanc. 12 medical images from `The Cancer Imaging Archive (TCIA)
13 <https://www.cancerimagingarchive.net/>`__, and serve them immediately
14 using Orthanc.
13 15
14 The plugin can be used to import so-called "cart spreadsheet" 16 The plugin can be used to import so-called "cart spreadsheet"
15 generated by the `NBIA Search Client 17 generated by the `NBIA Search Client
16 <https://nbia.cancerimagingarchive.net/nbia-search/>`__, or to browse 18 <https://nbia.cancerimagingarchive.net/nbia-search/>`__, or to browse
17 the image collections of TCIA thanks to its `REST API 19 the image collections of TCIA thanks to its `REST API
20 22
21 Compilation 23 Compilation
22 ----------- 24 -----------
23 25
24 .. highlight:: bash 26 .. highlight:: bash
27
28 Official releases can be `downloaded from the Orthanc homepage
29 <https://www.orthanc-server.com/browse.php?path=/plugin-tcia>`__. As
30 an alternative, the `repository containing the source code
31 <https://hg.orthanc-server.com/orthanc-tcia/>`__ can be accessed using
32 Mercurial.
25 33
26 The procedure to compile this plugin is similar of that for the 34 The procedure to compile this plugin is similar of that for the
27 :ref:`core of Orthanc <binaries>`. The following commands should work 35 :ref:`core of Orthanc <binaries>`. The following commands should work
28 for most UNIX-like distribution (including GNU/Linux):: 36 for most UNIX-like distribution (including GNU/Linux)::
29 37
41 Pre-compiled binaries for Microsoft Windows and macOS `are also 49 Pre-compiled binaries for Microsoft Windows and macOS `are also
42 available 50 available
43 <https://www.orthanc-server.com/browse.php?path=/plugin-tcia>`__. 51 <https://www.orthanc-server.com/browse.php?path=/plugin-tcia>`__.
44 52
45 Furthermore, the :ref:`Docker images <docker>` 53 Furthermore, the :ref:`Docker images <docker>`
46 ``jodogne/orthanc-plugins`` also contain the plugin. 54 ``jodogne/orthanc-plugins`` and ``osimis/orthanc`` also contain the
55 plugin.
47 56
48 57
49 Configuration 58 Configuration
50 ------------- 59 -------------
51 60
111 NBIA Search Client, that can then be imported using this plugin: 120 NBIA Search Client, that can then be imported using this plugin:
112 121
113 .. image:: ../images/tcia-nbia-export.png 122 .. image:: ../images/tcia-nbia-export.png
114 :align: center 123 :align: center
115 :width: 640 124 :width: 640
125
126 The TCIA plugin creates a job to do the import. This implies that an
127 import can be monitored, paused or stopped using the :ref:`REST API
128 for Orthanc jobs <jobs>`.
129