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fixing external hyperlinks
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 30 Mar 2020 18:47:35 +0200
parents 61050d813d74
children 525d59a7c198
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357:6b432ce3a56e 358:011b01ccf52d
16 images for digital pathology. 16 images for digital pathology.
17 3. Another command-line tool that converts a DICOM series stored 17 3. Another command-line tool that converts a DICOM series stored
18 inside Orthanc, to a standard hierarchical TIFF image. 18 inside Orthanc, to a standard hierarchical TIFF image.
19 19
20 For general information, check out the `official homepage of the 20 For general information, check out the `official homepage of the
21 framework <http://www.orthanc-server.com/static.php?page=wsi>`__. 21 framework <https://www.orthanc-server.com/static.php?page=wsi>`__.
22 22
23 23
24 Compilation 24 Compilation
25 ----------- 25 -----------
26 26
53 53
54 Microsoft Windows 54 Microsoft Windows
55 ^^^^^^^^^^^^^^^^^ 55 ^^^^^^^^^^^^^^^^^
56 56
57 Note that pre-compiled binaries for Microsoft Windows `are available 57 Note that pre-compiled binaries for Microsoft Windows `are available
58 <http://www.orthanc-server.com/browse.php?path=/whole-slide-imaging>`__. 58 <https://www.orthanc-server.com/browse.php?path=/whole-slide-imaging>`__.
59 59
60 60
61 Dynamic linking 61 Dynamic linking
62 ^^^^^^^^^^^^^^^ 62 ^^^^^^^^^^^^^^^
63 63
111 Explorer <orthanc-explorer>`, a yellow button entitled ``Whole-Slide 111 Explorer <orthanc-explorer>`, a yellow button entitled ``Whole-Slide
112 Imaging Viewer`` will show up for series corresponding to whole-slide 112 Imaging Viewer`` will show up for series corresponding to whole-slide
113 images. This button will open the WSI viewer for that particular 113 images. This button will open the WSI viewer for that particular
114 series. This behavior can be seen on the Orthanc Explorer interface 114 series. This behavior can be seen on the Orthanc Explorer interface
115 running on our `WSI demonstration server 115 running on our `WSI demonstration server
116 <http://wsi.orthanc-server.com/orthanc/app/explorer.html>`__. 116 <https://wsi.orthanc-server.com/orthanc/app/explorer.html>`__.
117 117
118 118
119 119
120 Command-line tools 120 Command-line tools
121 ------------------ 121 ------------------
219 219
220 Out-of-the-box, the DICOM-izer supports standard hierarchical TIFF 220 Out-of-the-box, the DICOM-izer supports standard hierarchical TIFF
221 images. Some commonplace image formats (PNG and JPEG) can be 221 images. Some commonplace image formats (PNG and JPEG) can be
222 DICOM-ized as well. However, whole-slide images can come in many 222 DICOM-ized as well. However, whole-slide images can come in many
223 proprietary file formats. To re-encode such images, the DICOM-izer 223 proprietary file formats. To re-encode such images, the DICOM-izer
224 relies upon the `OpenSlide toolbox <http://openslide.org/>`__. 224 relies upon the `OpenSlide toolbox <https://openslide.org/>`__.
225 225
226 For this feature to work, you have to tell the command-line tool where 226 For this feature to work, you have to tell the command-line tool where
227 it can find the OpenSlide shared library. GNU/Linux distributions 227 it can find the OpenSlide shared library. GNU/Linux distributions
228 generally provide packages containing the OpenSlide shared library 228 generally provide packages containing the OpenSlide shared library
229 (e.g. under Debian/Ubuntu, simply install the ``libopenslide0`` 229 (e.g. under Debian/Ubuntu, simply install the ``libopenslide0``
230 package):: 230 package)::
231 231
232 $ ./OrthancWSIDicomizer --openslide=libopenslide.so CMU-1-JP2K-33005.svs 232 $ ./OrthancWSIDicomizer --openslide=libopenslide.so CMU-1-JP2K-33005.svs
233 233
234 Pre-compiled Microsoft Windows binaries of this shared library can be 234 Pre-compiled Microsoft Windows binaries of this shared library can be
235 found on the `OpenSlide homepage <http://openslide.org/download/>`__ (Note that 235 found on the `OpenSlide homepage <https://openslide.org/download/>`__ (Note that
236 you should copy all .dll files from the OpenSlide package next to the OrthancWSIDicomizer 236 you should copy all .dll files from the OpenSlide package next to the OrthancWSIDicomizer
237 executable):: 237 executable)::
238 238
239 $ ./OrthancWSIDicomizer --openslide=libopenslide-0.dll CMU-1-JP2K-33005.svs 239 $ ./OrthancWSIDicomizer --openslide=libopenslide-0.dll CMU-1-JP2K-33005.svs
240 240