annotate Sphinx/source/users/replication.rst @ 848:dd3f89d1ab0f

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author Alain Mazy <am@osimis.io>
date Thu, 19 May 2022 09:06:24 +0200
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1 .. highlight:: bash
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2 .. _replication:
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3
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4 Replication and upgrade
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5 =======================
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6
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7 This page explains how to replicate the content of one instance of
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8 Orthanc to another instance of Orthanc. This is useful to **upgrade**
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9 between :ref:`versions of the database schema <db-versioning>`, or to
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10 create **mirrored DICOM servers**.
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12
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13 Upgrade the database schema
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14 ---------------------------
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15
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16 As explained :ref:`elsewhere in the Orthanc Book <db-versioning>`,
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17 successive versions of Orthanc might use a different version of the
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18 database schema. If this happens, Orthanc will refuse to start (with
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19 an explicit message in its :ref:`logs <log>`), to let the user decides
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20 whether she actually wants to upgrade the database.
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21
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22 At this point, the user could indeed choose to modify its
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23 :ref:`configuration file <configuration>` in order to create a new
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24 database elsewhere on the filesystem (if using the default SQLite
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25 backend), or on the database management system (e.g. if using
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26 :ref:`PostgreSQL <postgresql>` or :ref:`MySQL/MariaDB <mysql>`). This
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27 is important to let the user experiment a new version of Orthanc,
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28 while keeping the older version up and running.
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29
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30 If you decide to upgrade the database schema, you have to apply the
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31 following 3 steps:
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32
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33 1. If not done yet, stop the running Orthanc service:
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34
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35 * Under Microsoft Windows, use the `services control panel
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36 <https://en.wikipedia.org/wiki/Windows_service>`__.
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37 * Under Debian, use ``sudo /etc/init.d/orthanc stop``.
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39 2. Manually call Orthanc with the ``--upgrade`` command-line option,
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40 and point to your configuration file:
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41
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42 * Under Microsoft Windows, ``Orthanc.exe c:/Orthanc/ --upgrade``.
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43 * Under Debian, use ``sudo /usr/sbin/Orthanc /etc/orthanc/ --upgrade``.
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44
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45 3. Once the upgrade process is over, restart the Orthanc service:
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47 * Under Microsoft Windows, use the `services control panel
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48 <https://en.wikipedia.org/wiki/Windows_service>`__.
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49 * Under Debian, use ``sudo /etc/init.d/orthanc start``.
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50
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51 **Important remarks:**
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52
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53 * Orthanc is now considered as **stable**, which means that no upgrade
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54 in the database schema should occur in the near future.
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55 * Depending on the size of the Orthanc database, upgrading the
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56 database schema might take time, as this operation implies
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57 re-reading all the DICOM instances from the disk.
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58 * In the case of the official Debian and Fedora packages, the default
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59 location of the database changes with the version of its schema.
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60 For instance, DB schema version 6 will be stored in
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61 ``/var/lib/orthanc/db-v6/``. If upgrading the package (and if the
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62 configuration files are purged), a new database will automatically
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63 be created on the disk. Old data can be recovered either by changing
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64 the configuration in ``/etc/orthanc/`` to point to the previous
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65 location of the database then using ``--upgrade`` as written above,
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66 or by using the instructions for replication below.
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69 Direct access to the filesystem
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70 -------------------------------
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71
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72 The most direct way to replicate an instance of Orthanc consists in
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73 using the `ImportDicomFiles
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74 <https://hg.orthanc-server.com/orthanc/file/default/OrthancServer/Resources/Samples/ImportDicomFiles/ImportDicomFiles.py>`_
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75 script of the Orthanc distribution. For instance, the following
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76 command would recursively explore the content of the
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77 ``OrthancStorage`` folder (where Orthanc stores its DICOM files by
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78 default), and send each DICOM file inside this folder to the instance
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79 of Orthanc whose REST API is listening on
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80 ``http://192.168.0.2:8042``::
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82 $ python ImportDicomFiles.py 192.168.0.2 8042 OrthancStorage
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84 This method will only succeed if:
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85
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86 * The source Orthanc uses the default storage area on the filesystem
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87 (i.e. the source Orthanc does *not* store its DICOM files using one
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88 of the "storage area plugins", such as for `PostgreSQL
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89 <https://www.orthanc-server.com/static.php?page=postgresql>`_ or
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90 `MySQL/MariaDB
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91 <https://www.orthanc-server.com/static.php?page=mysql>`_ - but it's
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92 OK for the source of Orthanc to use any of the "index plugins"),
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93 * You have command-line access to the source Orthanc, and
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94 * The transparent :ref:`compression` of the DICOM instances is
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95 disabled (cf. option ``StorageCompression`` in the
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96 :ref:`configuration file <configuration>`).
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98 **Important remark:** Because of :ref:`the way Orthanc stores its
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99 database <orthanc-storage>` on the filesystem, it is *entirely normal*
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100 that the ``ImportDicomFiles.py`` script ends by saying that only half
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101 of the DICOM files were properly sent. This is because the JSON
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102 summaries are not DICOM files, and are thus rejected by the target
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103 Orthanc server. More information are available `on the discussion
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104 group
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105 <https://groups.google.com/d/msg/orthanc-users/Zlhtcpo76qQ/tp8EqaRCAQAJ>`__.
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109
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110 Generic replication
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111 -------------------
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112
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113 If you cannot use the first method, you can use the `Replicate
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114 <https://hg.orthanc-server.com/orthanc/file/default/OrthancServer/Resources/Samples/Python/Replicate.py>`_
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115 script of the Orthanc distribution. This script will use the REST API
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116 of both the source and target instances of Orthanc. For instance::
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117
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118 $ python Replicate.py http://orthanc:password@localhost:8042/ http://192.168.0.2/
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119
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120 Obviously, contrarily to the first method, the source instance of
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121 Orthanc must be up and running during the replication.