annotate Sphinx/source/plugins/osimis-webviewer.rst @ 304:a6831d200d43

fix link to osimis
author Alain Mazy <alain@mazy.be>
date Thu, 30 Jan 2020 13:06:52 +0100
parents 861643d5f808
children 32829e166b9d
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
301
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 .. _osimis_webviewer:
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 Osimis Web Viewer plugin
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5 ========================
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 .. contents::
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 This plugin by Osimis extends Orthanc with a Web viewer of medical
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 images, with more advanced features than the basic :ref:`Orthanc Web
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 viewer plugin <webviewer>`. The Osimis plugin adds tools for
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 measuring, for viewing multiple series, and for split-pane.
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 Importantly, contrarily to the basic Orthanc Web viewer, **CE
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 marking** is available. By buying such a CE marking, this viewer can
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 be used for diagnostic purpose.
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 For general information, check out the `official homepage of the
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 plugin
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 <http://www.orthanc-server.com/static.php?page=osimis-web-viewer>`__.
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 Also `check out the source code
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 <https://bitbucket.org/osimis/osimis-webviewer-plugin>`__.
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
24
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
25 How to get it
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
26 -------------
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
27
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
28 The Osimis Web viewer is part of the `Windows installers
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
29 <https://www.orthanc-server.com/download-windows.php>`__.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
30
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
31 For Linux users, you'll find it in the `osimis/orthanc <https://hub.docker.com/repository/docker/osimis/orthanc>`__
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
32 docker images or you can download the LSB binary `here <http://orthanc.osimis.io/lsb/plugin-osimis-webviewer/releases/1.3.1/libOsimisWebViewer.so>`__.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
33
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
34 The compilation process is quite complex since it requires to build
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
35 first the frontend and then the backend. All information can be found
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
36 in the `source code
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
37 <https://bitbucket.org/osimis/osimis-webviewer-plugin>`__.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
38
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
39
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
40 Usage
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
41 -----
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
42
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
43 .. highlight:: json
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
44
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
45 On Windows, the plugin is enabled by default.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
46
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
47 If you're using the ``osimis/orthanc`` docker image, you'll have
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
48 to define the WVB_ENABLED `environment variable <https://osimis.atlassian.net/wiki/spaces/OKB/pages/26738689/How+to+use+osimis+orthanc+Docker+images#Howtouseosimis/orthancDockerimages?-OsimisWebViewer>`__.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
49 to ``true``
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
50
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
51 On Linux, the Osimis Web viewer will only work with LSB orthanc binaries
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
52 that can be downloaded from `here <https://lsb.orthanc-server.com/>`__ and
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
53 that will work with most recent Linux distros.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
54
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
55 Once Orthanc is installed, you must change the :ref:`configuration file
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
56 <configuration>` to tell Orthanc where it can find the plugin: This is
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
57 done by properly modifying the ``Plugins`` option. You could for
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
58 instance use the following configuration file::
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
59
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
60 {
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
61 "Name" : "MyOrthanc",
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
62 [...]
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
63 "Plugins" : [
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
64 "/home/user/xxx/Downloads/libOsimisWebViewer.so"
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
65 ]
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
66 }
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
67
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
68 .. highlight:: text
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
69
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
70 Orthanc must of course be restarted after the modification of its
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
71 configuration file.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
72
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
73 Once a :ref:`DICOM study <model-world>` is opened using Orthanc
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
74 Explorer, a yellow button entitled ``Osimis Web Viewer`` will show
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
75 up. It will open the Web viewer for that particular study. See also
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
76 the demonstration video on `official homepage of the plugin
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
77 <https://www.orthanc-server.com/static.php?page=osimis-web-viewer>`__.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
78
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
79 Advanced options
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
80 ----------------
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
81
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
82 .. highlight:: json
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
83
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
84 The configuration of the Web viewer can be fine-tuned by adding some in
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
85 the `configuration file <https://bitbucket.org/osimis/osimis-webviewer-plugin/src/master/doc/default-configuration.json>`__.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
86
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
87 FAQ
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
88 ---
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
89
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
90 - **What video formats are supported by the Osimis Web Viewer ?**
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
91
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
92 The set of codecs supported by the Osimis Viewer is an intersection of the sets of codecs supported by
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
93 the `DICOM standard <http://dicom.nema.org/medical/dicom/current/output/chtml/part05/PS3.5.html>`__
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
94 and those supported by the `web browsers <https://developer.mozilla.org/en-US/docs/Web/HTML/Supported_media_formats>`__.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
95 In short, this mostly comes down to just MPEG-4.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
96
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
97 - **Where are the annotations stored ?**
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
98
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
99 Annotations are stored in :ref:`metadata <metadata>`. Note that annotation
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
100 storage is disabled by default and can be enabled by setting ``"AnnotationStorageEnabled": true``
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
101 in the configuration file.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
102
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
103
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
104
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
105 CE marking
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
106 ----------
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
107
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
108 Legally, in Europe, the Osimis Web viewer can not be used for medical usage unless you
304
a6831d200d43 fix link to osimis
Alain Mazy <alain@mazy.be>
parents: 303
diff changeset
109 purchase the `CE marked version by Osimis <https://www.osimis.io/en/services.html>`__.
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
110 If you're outside Europe, you should check your local regulation but it's most likely
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
111 that you're not allowed to use it for medical usage as well.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
112
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
113 Although the free and open source version of the Osimis Web viewer offers the same feature scope,
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
114 CE marking requires a "supplier-end user" agreement in which the supplier guarantees that:
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
115
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
116 - the viewer has been tested for medical use against all possible patient risk,
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
117 - the end user receives regular updates on new features and bug fixes,
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
118 - the end user can be informed of any bug in the medical device.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
119