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annotate Sphinx/source/plugins/dicomweb.rst @ 349:60080d792f25

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rephrasing
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 27 Mar 2020 18:21:55 +0100
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1 .. _dicomweb:
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4 DICOMweb plugin
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5 ===============
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6
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7 .. contents::
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8
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9 This **official** plugin extends Orthanc with support of the `DICOMweb
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10 protocols <https://en.wikipedia.org/wiki/DICOMweb>`__. More precisely,
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11 the plugin introduces a basic, reference implementation of WADO-URI,
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12 WADO-RS, QIDO-RS and STOW-RS, following `DICOM PS3.18
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13 <http://dicom.nema.org/medical/dicom/current/output/html/part18.html>`__.
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14 The plugin simultaneously turns Orthanc into a **DICOMweb server** and
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15 into a **DICOMweb client**.
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16
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17 For general information, check out the `official homepage of the
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18 plugins <http://www.orthanc-server.com/static.php?page=dicomweb>`__.
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19
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20 The full standard is not implemented yet, the supported features are
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21 `tracked in the repository
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22 <https://bitbucket.org/sjodogne/orthanc-dicomweb/src/default/Status.txt>`__.
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25 Compilation
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26 -----------
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27
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28 .. highlight:: text
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30 The procedure to compile this plugin is similar of that for the
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31 :ref:`core of Orthanc <compiling>`. The following commands should work
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32 for every UNIX-like distribution (including GNU/Linux)::
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33
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34 $ mkdir Build
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35 $ cd Build
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36 $ cmake .. -DSTATIC_BUILD=ON -DCMAKE_BUILD_TYPE=Release
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37 $ make
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39 The compilation will produce a shared library ``OrthancDicomWeb`` that
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40 contains the DICOMweb plugin. Pre-compiled binaries for Microsoft
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41 Windows `are also available
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42 <http://www.orthanc-server.com/browse.php?path=/plugin-dicom-web>`__,
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43 and are included in the `Windows installers
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44 <https://www.orthanc-server.com/download-windows.php>`__. A package
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45 for `Apple's Mac OS X
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46 <http://localhost/~jodogne/orthanc/static.php?page=download-mac>`__ is
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47 available courtesy of `Osimis <http://osimis.io/>`__.
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48
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49 *Remark:* Some older build instructions are also available in the
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50 `source distribution
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51 <https://bitbucket.org/sjodogne/orthanc-dicomweb/src/default/Resources/BuildInstructions.txt>`__.
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52
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53
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54 Installation
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55 ------------
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57 .. highlight:: json
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58
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59 You of course first have to :ref:`install Orthanc <binaries>`. Once
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60 Orthanc is installed, you must change the :ref:`configuration file
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61 <configuration>` to tell Orthanc where it can find the plugin: This is
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62 done by properly modifying the ``Plugins`` option. For GNU/Linux, you
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63 could for instance use the following configuration file::
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65 {
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66 "Name" : "MyOrthanc",
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67 [...]
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68 "Plugins" : [
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69 "/home/user/OrthancDicomWeb/Build/libOrthancDicomWeb.so"
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70 ]
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71 }
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72
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73 Or, for Windows::
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74
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75 {
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76 "Name" : "MyOrthanc",
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77 [...]
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78 "Plugins" : [
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79 "c:/Temp/OrthancDicomWeb.dll"
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80 ]
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81 }
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82
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83 Note that the DICOMweb server will share all the parameters of the
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84 Orthanc HTTP server, notably wrt. authentication and HTTPS
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85 encryption. For this reason, you will most probably have to enable the
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86 remote access to the Orthanc HTTP server::
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87
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88 {
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89 [...]
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90 "RemoteAccessEnabled" : true,
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91 [...]
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92 }
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93
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94 Once Orthanc has restarted, the root of the DICOMweb REST API is
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95 accessible at ``http://localhost:8042/dicom-web/``.
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97
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98 Options
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99 -------
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100
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101
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102 .. _dicomweb-server-config:
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103
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104 Server-related options
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105 ^^^^^^^^^^^^^^^^^^^^^^
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106
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107 .. highlight:: json
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108
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109 There are several configuration options that can be set to fine-tune
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110 the Orthanc DICOMweb server. Here is the full list of the available
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111 options, all of them must be grouped inside the ``DicomWeb`` section of
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112 the Orthanc configuration file::
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113
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114 {
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115 [...]
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116 "DicomWeb" : {
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117 "Enable" : true, // Whether DICOMweb support is enabled
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118 "Root" : "/dicom-web/", // Root URI of the DICOMweb API (for QIDO-RS, STOW-RS and WADO-RS)
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119 "EnableWado" : true, // Whether WADO-URI (previously known as WADO) support is enabled
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120 "WadoRoot" : "/wado", // Root URI of the WADO-URI (aka. WADO) API
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121 "Ssl" : false, // Whether HTTPS should be used for subsequent WADO-RS requests
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122 "QidoCaseSensitive" : true, // For QIDO-RS server, whether search is case sensitive (since release 0.5)
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123 "Host" : "localhost", // Hard-codes the name of the host for subsequent WADO-RS requests (deprecated)
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124 "StudiesMetadata" : "Full", // How study-level metadata is retrieved (since release 1.1, cf. section below)
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125 "SeriesMetadata" : "Full" // How series-level metadata is retrieved (since release 1.1, cf. section below)
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126 }
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127 }
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128
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129 Furthermore, the global option ``DefaultEncoding`` specifies the
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130 encoding (specific character set) that will be used when answering a
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131 QIDO-RS request. It might be a good idea to set this option to
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132 ``Utf8`` if you are dealing with an international environment.
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133
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134 **Remark 1:** The following configuration options were present in
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135 releases <= 0.6 of the plugin, but are not used anymore::
260
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136
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137 {
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138 [...]
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139 "DicomWeb" : {
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140 "StowMaxInstances" : 10, // For STOW-RS client, the maximum number of instances in one single HTTP query (0 = no limit)
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141 "StowMaxSize" : 10, // For STOW-RS client, the maximum size of the body in one single HTTP query (in MB, 0 = no limit)
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142 }
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143 }
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144
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145 These older configuration options were used to limit the size of the
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146 HTTP requests, by issuing multiple calls to STOW-RS (set both options
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147 to 0 to send one single request).
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148
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149
318
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150 **Remark 2:** The option ``Host`` is deprecated. Starting with release
243
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151 0.7 of the DICOMweb plugin, its value are computed from the standard
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152 HTTP headers ``Forwarded`` and ``Host``, as provided by the HTTP
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153 clients.
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154
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155
320
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156 .. _dicomweb-server-metadata-config:
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157
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158 Fine-tuning server for WADO-RS Retrieve Metadata
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159 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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160
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161 The options ``StudiesMetadata`` and ``SeriesMetadata`` were introduced
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162 in release 1.1 of the DICOMweb plugin. These options specify how the
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163 calls to ``/dicom-web/studies/.../metadata`` and
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164 ``/dicom-web/studies/.../series/.../metadata`` (i.e. `WADO-RS Retrieve
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165 Metadata
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166 <http://dicom.nema.org/medical/dicom/2019a/output/chtml/part18/sect_6.5.6.html>`__)
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167 are processed:
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168
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169 * If ``Full`` mode is used, the plugin will read all the DICOM
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170 instances of the study/series of interest from the :ref:`storage
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171 area <orthanc-storage>`, which gives fully accurate results but
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172 requires all the individual instances to be read and parsed from the
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173 filesystem, leading to slow performance (cf. `issue 162
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174 <https://bitbucket.org/sjodogne/orthanc/issues/162/dicomweb-metadata-resource-reads-all>`__).
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175 This is the default mode.
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176
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177 * If ``MainDicomTags`` mode is used, the plugin will only report the
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178 main DICOM tags that are indexed by the Orthanc database. The DICOM
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179 files are not read from the disk, which provides best
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180 performance. However, this is a small subset of all the tags that
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181 would be retrieved if using the ``Full`` mode: A DICOMweb viewer
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182 might need more tags.
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183
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184 * If ``Extrapolate`` mode is used, the plugin will read up to 3 DICOM
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185 instances at random that belong to the study/series of interest. It
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186 will then test whether the majority of these instances share the
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187 same value for a predefined subset of DICOM tags. If so, this value
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188 is added to the metadata response; otherwise, the tag is not
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189 reported. In other words, this mode extrapolates the value of some
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190 predefined tags by assuming that these tags should be constant
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191 across all the instances of the study/series. This mode is a
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192 compromise between ``MainDicomTags`` (focus on speed) and ``Full``
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193 (focus on accuracy).
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194
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195 * If you are using a DICOMweb viewer (such as forthcoming Stone Web
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196 viewer or `OHIF viewer
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197 <https://groups.google.com/d/msg/orthanc-users/y1N5zOFVk0M/a3YMdhNqBwAJ>`__)
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198 in a setup where performance and accuracy are both important, you
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199 should most probably set ``StudiesMetadata`` to ``MainDicomTags``
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200 and ``SeriesMetadata`` to ``Full``. Forthcoming Stone Web viewer
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201 will probably specify a value for the
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202 ``SeriesMetadataExtrapolatedTags`` option to be used for setups
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203 where performance is extremely important.
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204
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205
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206 If using the ``Extrapolate`` mode, the predefined tags are provided
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207 using the ``StudiesMetadataExtrapolatedTags`` and
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208 ``SeriesMetadataExtrapolatedTags`` configuration options as follows::
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209
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210 {
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211 [...]
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212 "DicomWeb" : {
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213 [...]
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214 "StudiesMetadata" : "Extrapolate",
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215 "StudiesMetadataExtrapolatedTags" : [
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216 "AcquisitionDate"
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217 ],
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218 "SeriesMetadata" : "Extrapolate",
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219 "SeriesMetadataExtrapolatedTags" : [
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220 "BitsAllocated",
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221 "BitsStored",
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222 "Columns",
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223 "HighBit",
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224 "PhotometricInterpretation",
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225 "PixelSpacing",
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226 "PlanarConfiguration",
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227 "RescaleIntercept",
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228 "RescaleSlope",
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229 "Rows",
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230 "SOPClassUID",
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231 "SamplesPerPixel",
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232 "SliceThickness"
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233 ]
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234 }
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235 }
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236
32
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237
255
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238 .. _dicomweb-client-config:
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239
32
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240 Client-related options
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241 ^^^^^^^^^^^^^^^^^^^^^^
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242
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243 .. highlight:: json
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244
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245 If you want to connect Orthanc as a client to remote DICOMweb servers
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246 (cf. below), you need to modify the configuration file so as to define
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247 each of them in the option ``DicomWeb.Servers``. The syntax is
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248 identical to the ``OrthancPeers`` option of the :ref:`configuration of
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249 the Orthanc core <configuration>`.
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250
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251 In the most simple case, here is how to instruct Orthanc about the
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252 existence of a password-less DICOMweb server that will be referred to
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253 as "sample" in Orthanc::
30
79b6d3ea92aa dicomweb
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254
79b6d3ea92aa dicomweb
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255 {
32
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256 [...]
30
79b6d3ea92aa dicomweb
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257 "DicomWeb" : {
32
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258 "Servers" : {
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259 "sample" : [ "http://192.168.1.1/dicom-web/" ]
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260 }
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261 }
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262 }
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263
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264 You are of course free to add as many DICOMweb servers as you need. If
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265 the DICOMweb server is protected by a password (with `HTTP Basic
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266 access authentication
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267 <https://en.wikipedia.org/wiki/Basic_access_authentication>`__)::
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268
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269 {
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270 [...]
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271 "DicomWeb" : {
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272 "Servers" : {
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273 "sample" : [ "http://192.168.1.1/dicom-web/", "username", "password" ]
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274 }
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275 }
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276 }
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277
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278 Three important options can be provided for individual remote DICOMweb servers:
260
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279
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280 * ``HasDelete`` can be set to ``true`` to indicate that the HTTP
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281 DELETE method can be used to delete remote studies/series/instances.
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282 This notably adds a "delete" button on the Web interface of the
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283 DICOMweb client, and creates a route
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284 ``/dicom-web/servers/sample/delete`` in the REST API.
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285
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286 * ``ChunkedTransfers`` must be set to ``false`` if the remote DICOMweb
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287 server does not support `HTTP chunked transfer encoding
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288 <https://en.wikipedia.org/wiki/Chunked_transfer_encoding>`__. Setting
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289 this option to ``true`` is the best choice to reduce memory
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290 consumption. However, it must be set to ``false`` if the remote
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291 DICOMweb server is Orthanc <= 1.5.6, as chunked transfer encoding is
325
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292 only supported starting with Orthanc 1.5.7. Beware setting
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293 ``ChunkedTransfers`` to ``true`` in Orthanc 1.5.7 and 1.5.8 utilizes
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294 one CPU at 100%, which results in very low throughput: This issue is
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295 resolved in Orthanc 1.6.0 (cf. `issue 156
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296 <https://bitbucket.org/sjodogne/orthanc/issues/156/>`__ for full
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297 explanation).
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298
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299 * ``HasWadoRsUniversalTransferSyntax`` (new in DICOMweb 1.1) must be
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300 set to ``false`` if the remote DICOMweb server does not support the
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301 value ``transfer-syntax=*`` in the ``Accept`` HTTP header for
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302 WADO-RS requests. This option is notably needed if the remote
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303 DICOMweb server is Orthanc equipped with DICOMweb plugin <= 1.0. On
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304 the other hand, setting this option to ``true`` prevents the remote
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305 DICOMweb server from transcoding to uncompressed transfer syntaxes,
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306 which gives `much better performance
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307 <https://groups.google.com/d/msg/orthanc-users/w1Ekrsc6-U8/T2a_DoQ5CwAJ>`__.
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308 The implicit value of this parameter was ``false`` in DICOMweb
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309 plugin <= 1.0, and its default value is ``true`` since DICOMweb
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310 plugin 1.1.
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311
260
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312 You'll have to convert the JSON array into a JSON object to set these
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313 options::
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314
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315 {
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316 [...]
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317 "DicomWeb" : {
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318 "Servers" : {
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319 "sample" : {
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320 "Url" : "http://192.168.1.1/dicom-web/",
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321 "Username" : "username",
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322 "Password" : "password",
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323 "HasDelete" : true,
324
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324 "ChunkedTransfers" : true, // Set to "false" if "sample" is Orthanc <= 1.5.6
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325 "HasWadoRsUniversalTransferSyntax" : true // Set to "false" if "sample" is Orthanc DICOMweb plugin <= 1.0
260
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326 }
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327 }
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328 }
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329 }
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330
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331
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332 Furthermore, if the DICOMweb server is protected with HTTPS client
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333 authentication, you must provide your client certificate (in the `PEM
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334 format
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335 <https://en.wikipedia.org/wiki/Privacy-enhanced_Electronic_Mail>`__),
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336 your client private key (also in the PEM format), together with the
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337 password protecting the private key::
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338
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339 {
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340 [...]
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341 "DicomWeb" : {
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342 "Servers" : {
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343 "sample" : {
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344 "Url" : "http://192.168.1.1/dicom-web/",
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345 "CertificateFile" : "client.crt",
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346 "CertificateKeyFile" : "client.key",
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347 "CertificateKeyPassword" : "password"
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348 }
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349 }
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350 }
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351 }
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352
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353 Finally, it is also possible to use client authentication with
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354 hardware security modules and smart cards through `PKCS#11
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355 <https://en.wikipedia.org/wiki/PKCS_11>`__ (this feature is only
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356 available is the core of Orthanc was compiled with the
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357 ``-DENABLE_PKCS11=ON`` option in CMake, and if the Orthanc
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358 configuration file has a proper ``Pkcs11`` section)::
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359
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360 {
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361 [...]
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362 "DicomWeb" : {
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363 "Servers" : {
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364 "sample" : {
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365 "Url" : "http://192.168.1.1/dicom-web/",
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366 "Pkcs11" : true
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367 }
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368 }
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369 }
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370 }
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371
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372 **Remark:** A :ref:`plugin by Osimis <google>` is available to
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373 dynamically create authenticated connections to Google Cloud Platform.
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374
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375 **Important remark:** When querying a DICOMweb server, Orthanc will
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376 automatically use the global configuration options ``HttpProxy``,
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377 ``HttpTimeout``, ``HttpsVerifyPeers``, ``HttpsCACertificates``, and
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378 ``Pkcs11``. Make sure to adapt them if need be.
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379
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380
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381 Quickstart - DICOMweb client
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382 ----------------------------
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383
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384 Starting with version 1.0 of the DICOMweb plugin, a Web interface is
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385 provided to use Orthanc as a DICOMweb client. Simply click on the
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386 "Open DICOMweb client" button at the bottom of the welcome screen of
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387 :ref:`Orthanc Explorer <orthanc-explorer>`.
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388
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389 Here is a direct link to the DICOMweb client running on our demo
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390 server:
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391 `http://demo.orthanc-server.com/dicom-web/app/client/index.html
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392 <http://demo.orthanc-server.com/dicom-web/app/client/index.html>`__
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393
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394
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395
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396 Quickstart - DICOMweb server
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397 ----------------------------
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398
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399 Once your Orthanc server is properly configured (see above), you can
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400 make REST calls to the API of the DICOMweb server. For demonstration
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401 purpose, this section makes the assumption that the ``VIX`` dataset
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402 provided by `OsiriX <http://www.osirix-viewer.com/datasets/>`__ has
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403 been uploaded to Orthanc.
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404
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405 WADO-URI
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406 ^^^^^^^^
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407
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408 .. highlight:: text
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409
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410 Here is a proper WADO-URI (previously known simply as WADO) request to
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411 render one slice of the VIX dataset as a JPEG image::
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412
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413 http://localhost:8042/wado?objectUID=1.3.12.2.1107.5.1.4.54693.30000006100507010800000005466&requestType=WADO
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414
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415
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416 .. highlight:: bash
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417
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418 The ``objectUID`` corresponds to the ``SOPInstanceUID`` DICOM tag of
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419 some instance in the ``VIX`` dataset. Given the Orthanc identifier of
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420 an instance from VIX
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421 (e.g. ``14b4db2c-065edecb-6a767936-7068293a-92fcb080``), the latter
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422 tag can be obtained from the ``MainDicomTags`` field::
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423
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424 $ curl http://localhost:8042/instances/14b4db2c-065edecb-6a767936-7068293a-92fcb080
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425
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426
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427 QIDO-RS
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428 ^^^^^^^
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429
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430 .. highlight:: bash
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431
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432 Regarding QIDO-RS (querying the content of a remote DICOMweb server),
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433 here is how to obtain the list of studies stored by Orthanc::
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434
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435 $ curl http://localhost:8042/dicom-web/studies
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436
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437 Note that the ``/dicom-web/`` prefix comes from the configuration
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438 option ``Root`` of the ``DicomWeb`` section. Filtering the studies is
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439 possible as follows::
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440
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441 $ curl http://localhost:8042/dicom-web/studies?PatientName=VIX
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442
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443
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444
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445 WADO-RS
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446 ^^^^^^^
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447
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448 A study can be retrieved through WADO-RS. Here is a sample using the VIX dataset::
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449
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450 $ curl http://localhost:8042/dicom-web/studies/2.16.840.1.113669.632.20.1211.10000315526/
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451
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452 This answer is a `multipart stream
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453 <https://en.wikipedia.org/wiki/MIME#Multipart_messages>`__ of
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454 ``application/dicom`` DICOM instances, so a Web browser will not be
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455 able to display it (. You will have to use either AJAX (JavaScript) or a
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456 command-line tool (such as cURL).
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457
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458 You can render one individual frame as a plain PNG image as follows::
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459
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460 $ curl http://localhost:8042/dicom-web/studies/2.16.840.1.113669.632.20.1211.10000315526/series/1.3.12.2.1107.5.1.4.54693.30000006100507010800000005268/instances/1.3.12.2.1107.5.1.4.54693.30000006100507010800000005466/frames/1/rendered -H 'accept: image/png'
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461
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462
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463 Other endpoints
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464 ^^^^^^^^^^^^^^^
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465
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466 This page only provides some very basic examples about the use of a
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467 DICOMweb server. Please check out `the full reference of the DICOMweb
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468 API <https://www.dicomstandard.org/dicomweb/>`__ for more information.
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469
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470
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471
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472 .. _dicomweb-client:
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473
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474 REST API of the Orthanc DICOMweb client
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475 ---------------------------------------
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476
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477 Listing the available servers
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478 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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479
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480 .. highlight:: bash
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481
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482 The list of the remote DICOMweb servers that are known to the DICOMweb
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483 plugin can be obtained as follows::
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484
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485 $ curl http://localhost:8042/dicom-web/servers/
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486 [ "sample" ]
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487
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488 In this case, a single server called ``sample`` is configured.
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489
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490
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491 Making a call to QIDO-RS or WADO-RS
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492 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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493
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494 .. highlight:: bash
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495
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496 In Orthanc, the URI ``/{dicom-web-root}/servers/{name}/get`` allows to
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497 make a HTTP GET call against a DICOMweb server. This can be used to
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498 issue a QIDO-RS or WADO-RS command. Orthanc will take care of properly
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499 encoding the URL and authenticating the client. For instance, here is
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500 a sample QIDO-RS search to query all the studies (using a bash
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501 command-line)::
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502
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503 $ curl http://localhost:8042/dicom-web/servers/sample/get -d @- << EOF
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504 {
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505 "Uri" : "/studies"
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506 }
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507 EOF
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508
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509 The result of this call is a JSON document formatted according to the
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510 DICOMweb standard. You do not have to specify the base URL of the
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511 remote DICOMweb server, as it is encoded in the configuration file.
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512
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513 As a more advanced example, here is how to search all the series
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514 associated with a given patient name, while requesting to use an XML
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515 format::
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516
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517 $ curl http://localhost:8042/dicom-web/servers/sample/get -d @- << EOF
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518 {
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519 "Uri" : "/series",
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520 "HttpHeaders" : {
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521 "Accept" : "application/dicom+xml"
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522 },
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523 "Arguments" : {
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524 "00100010" : "KNIX"
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525 }
03b32d0e49f2 documentation of the dicomweb plugin
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diff changeset
526 }
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
527 EOF
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
528
260
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
529 The result of the command above is a `multipart stream
f9e7036d81d0 updating DICOMweb documentation
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parents: 255
diff changeset
530 <https://en.wikipedia.org/wiki/MIME#Multipart_messages>`__ of XML
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
531 documents describing each series.
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
532
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
533 Note how all the GET arguments to the QIDO-RS request must be
89
c9a33e4a0577 fix mixup between HttpArguments and HttpHeaders in WADO-RS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 81
diff changeset
534 specified in the ``Arguments`` field. Orthanc will take care of
260
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
535 `properly encoding it as an URL
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
536 <https://en.wikipedia.org/wiki/Percent-encoding>`__.
32
03b32d0e49f2 documentation of the dicomweb plugin
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parents: 31
diff changeset
537
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
538 An user-friendly reference of the features available in QIDO-RS and
33
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
539 WADO-RS `can be found on this site <http://www.dicomweb.org/>`__.
32
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
540
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
541
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
542 Sending DICOM resources to a STOW-RS server
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
543 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
03b32d0e49f2 documentation of the dicomweb plugin
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diff changeset
544
260
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
545 .. highlight:: bash
32
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
546
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
547 STOW-RS allows to send local DICOM resources to a remote DICOMweb
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
548 server. In Orthanc, the STOW-RS client primitive is available at URI
03b32d0e49f2 documentation of the dicomweb plugin
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diff changeset
549 ``/{dicom-web-root}/servers/{name}/stow``. Here is a sample call::
03b32d0e49f2 documentation of the dicomweb plugin
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diff changeset
550
260
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
551 $ curl http://localhost:8042/dicom-web/servers/sample/stow -X POST -d @- << EOF
32
03b32d0e49f2 documentation of the dicomweb plugin
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parents: 31
diff changeset
552 {
03b32d0e49f2 documentation of the dicomweb plugin
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parents: 31
diff changeset
553 "Resources" : [
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
554 "6ca4c9f3-5e895cb3-4d82c6da-09e060fe-9c59f228"
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
555 ]
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
556 }
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
557 EOF
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
558
03b32d0e49f2 documentation of the dicomweb plugin
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diff changeset
559 Note that this primitive takes as its input a list of :ref:`Orthanc
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
560 identifiers <orthanc-ids>` corresponding to the resources (patients,
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
561 studies, series and/or instances) to be exported.
03b32d0e49f2 documentation of the dicomweb plugin
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parents: 31
diff changeset
562
260
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
563 Additional HTTP headers can be added with an optional ``HttpHeaders``
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
564 argument as for QIDO-RS and WADO-RS. This might be useful e.g. for
f9e7036d81d0 updating DICOMweb documentation
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parents: 255
diff changeset
565 cookie-based session management.
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
566
262
3391edf37359 note for packagers
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diff changeset
567 Internally, this call results in creating an :ref:`Orthanc job <jobs>`
260
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
568 that is executed synchronously (the REST call only returns once the
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
569 STOW-RS request is finished). You can run the job in asynchronous
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
570 mode as follows::
32
03b32d0e49f2 documentation of the dicomweb plugin
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diff changeset
571
260
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
572 $ curl http://localhost:8042/dicom-web/servers/sample/stow -X POST -d @- << EOF
f9e7036d81d0 updating DICOMweb documentation
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parents: 255
diff changeset
573 {
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
574 "Resources" : [
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
575 "6ca4c9f3-5e895cb3-4d82c6da-09e060fe-9c59f228"
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
576 ],
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
577 "Synchronous" : false,
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
578 "Priority" : 10
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
579 }
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
580 EOF
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
581
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
582 {
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
583 "ID" : "a7bd2a5c-291d-4ca5-977a-66502cab22a1",
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
584 "Path" : ".././../jobs/a7bd2a5c-291d-4ca5-977a-66502cab22a1"
f9e7036d81d0 updating DICOMweb documentation
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parents: 255
diff changeset
585 }
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
586
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
587 Such a call ends immediately, and returns the ID of the job created by
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
588 Orthanc. The :ref:`status of the job <jobs-monitoring>` can then be
f9e7036d81d0 updating DICOMweb documentation
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parents: 255
diff changeset
589 monitored using the Orthanc REST API.
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
590
32
03b32d0e49f2 documentation of the dicomweb plugin
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parents: 31
diff changeset
591
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
592
03b32d0e49f2 documentation of the dicomweb plugin
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parents: 31
diff changeset
593 Retrieving DICOM resources from a WADO-RS server
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
594 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
03b32d0e49f2 documentation of the dicomweb plugin
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diff changeset
595
260
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
596 .. highlight:: bash
32
03b32d0e49f2 documentation of the dicomweb plugin
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parents: 31
diff changeset
597
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
598 Once DICOM resources of interest have been identified through a
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
599 QIDO-RS call to a remote DICOMweb server (cf. above), it is
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
600 interesting to download them locally with a WADO-RS call. You could do
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
601 it manually with a second call to the
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
602 ``/{dicom-web-root}/servers/{name}/get`` URI, but Orthanc provides
260
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
603 another primitive ``.../retrieve`` to automate this process, in order
f9e7036d81d0 updating DICOMweb documentation
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parents: 255
diff changeset
604 to avoid the manual parsing of the multipart stream.
32
03b32d0e49f2 documentation of the dicomweb plugin
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parents: 31
diff changeset
605
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
606 Here is how you would download one study, one series and one instance
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
607 whose StudyInstanceUID (0020,000d), SeriesInstanceUID (0020,000e) are
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
608 SOPInstanceUID (0008,0018) have been identified through a former
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
609 QIDO-RS call::
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
610
260
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
611 $ curl http://localhost:8042/dicom-web/servers/sample/retrieve -X POST -d @- << EOF
32
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
612 {
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
613 "Resources" : [
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
614 {
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
615 "Study" : "1.3.51.0.1.1.192.168.29.133.1688840.1688819"
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
616 },
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
617 {
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
618 "Study" : "1.3.51.0.1.1.192.168.29.133.1681753.1681732",
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
619 "Series" : "1.3.12.2.1107.5.2.33.37097.2012041613040617636372171.0.0.0"
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
620 },
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
621 {
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
622 "Study" : "1.3.51.0.1.1.192.168.29.133.1681753.1681732",
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
623 "Series" : "1.3.12.2.1107.5.2.33.37097.2012041612474981424569674.0.0.0",
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
624 "Instance" : "1.3.12.2.1107.5.2.33.37097.2012041612485540185869716"
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
625 }
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
626 ]
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
627 }
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
628 EOF
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
629
03b32d0e49f2 documentation of the dicomweb plugin
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parents: 31
diff changeset
630 Orthanc will reply with the list of the Orthanc identifiers of all the
03b32d0e49f2 documentation of the dicomweb plugin
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parents: 31
diff changeset
631 DICOM instances that were downloaded from the remote server.
03b32d0e49f2 documentation of the dicomweb plugin
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parents: 31
diff changeset
632
03b32d0e49f2 documentation of the dicomweb plugin
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parents: 31
diff changeset
633 Remark 1: Contrarily to the ``.../stow`` URI that uses :ref:`Orthanc
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
634 identifiers <orthanc-ids>`, the ``.../retrieve`` URI uses DICOM
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
635 identifiers.
03b32d0e49f2 documentation of the dicomweb plugin
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diff changeset
636
89
c9a33e4a0577 fix mixup between HttpArguments and HttpHeaders in WADO-RS
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parents: 81
diff changeset
637 Remark 2: The ``HttpHeaders`` and ``Arguments`` arguments are also
260
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parents: 255
diff changeset
638 available, as for QIDO-RS, to fine-tune the parameters of the WADO-RS
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
639 request.
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
640
f9e7036d81d0 updating DICOMweb documentation
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diff changeset
641 Remark 3: As for QIDO-RS, the request is run synchronously by default.
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parents: 255
diff changeset
642 The ``Synchronous`` and ``Priority`` arguments can be used to
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diff changeset
643 asynchronously run the request.
32
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diff changeset
644
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parents: 31
diff changeset
645
03b32d0e49f2 documentation of the dicomweb plugin
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parents: 31
diff changeset
646
03b32d0e49f2 documentation of the dicomweb plugin
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parents: 31
diff changeset
647 Additional samples
03b32d0e49f2 documentation of the dicomweb plugin
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diff changeset
648 ------------------
03b32d0e49f2 documentation of the dicomweb plugin
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parents: 31
diff changeset
649
03b32d0e49f2 documentation of the dicomweb plugin
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diff changeset
650 Samples of how to call DICOMweb services from standalone applications
03b32d0e49f2 documentation of the dicomweb plugin
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diff changeset
651 are available for `Python
03b32d0e49f2 documentation of the dicomweb plugin
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diff changeset
652 <https://bitbucket.org/sjodogne/orthanc-dicomweb/src/default/Resources/Samples/Python/>`__
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diff changeset
653 and for `JavaScript
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
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654 <https://bitbucket.org/sjodogne/orthanc-dicomweb/src/default/Resources/Samples/JavaScript>`__.
03b32d0e49f2 documentation of the dicomweb plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
655
260
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
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656 Integration tests are `available separately
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
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657 <https://bitbucket.org/sjodogne/orthanc-tests/src/default/Plugins/DicomWeb/Run.py>`__,
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
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658 and provide samples for more advanced features of the REST API (such
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
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659 as dynamically adding/updating/removing remote DICOMweb servers using
f9e7036d81d0 updating DICOMweb documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
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660 HTTP PUT and DELETE methods).