annotate Sphinx/source/plugins/indexer.rst @ 962:5df222ddd7d1

fix links to setup-samples
author Alain Mazy <am@osimis.io>
date Wed, 28 Jun 2023 09:23:16 +0200
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1 .. _indexer:
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4 Folder Indexer plugin
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5 =====================
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7 .. contents::
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8
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9 This **official** plugin by the `ICTEAM institute of UCLouvain
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10 <https://uclouvain.be/en/research-institutes/icteam>`__ uses Orthanc
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11 to publish filesystems containing medical images as a DICOM modality.
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12
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13 The plugin continuously synchronizes the content of an Orthanc server
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14 with the content of a filesystem, which can then be accessed, through
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15 Orthanc, based on the :ref:`DICOM model of the real world <model-world>`.
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16 The indexed DICOM resources are immediately available in a Web
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17 interface and in a Web viewer, and can be queried/retrieved by DICOM
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18 clients. The DICOM files are **not** copied, so this solution has a
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19 very small footprint in terms of storage requirements.
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22 Compilation
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23 -----------
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24
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25 .. highlight:: bash
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26
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27 Official releases can be `downloaded from the Orthanc homepage
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28 <https://www.orthanc-server.com/browse.php?path=/plugin-indexer>`__. As
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29 an alternative, the `repository containing the source code
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30 <https://orthanc.uclouvain.be/hg/orthanc-indexer/>`__ can be accessed using
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31 Mercurial.
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32
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33 The procedure to compile this plugin is similar of that for the
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34 :ref:`core of Orthanc <binaries>`. The following commands should work
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35 for most UNIX-like distribution (including GNU/Linux)::
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36
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37 $ mkdir Build
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38 $ cd Build
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39 $ cmake .. -DSTATIC_BUILD=ON -DCMAKE_BUILD_TYPE=Release
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40 $ make
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41
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42 The compilation will produce a shared library ``OrthancIndexer``
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43 that contains the folder indexer plugin for Orthanc.
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45 Pre-compiled Linux Standard Base (LSB) binaries `can be downloaded
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46 <https://lsb.orthanc-server.com/plugin-indexer/>`__.
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48 Pre-compiled binaries for Microsoft Windows and macOS `are also
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49 available
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50 <https://www.orthanc-server.com/browse.php?path=/plugin-indexer>`__.
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52 Furthermore, the :ref:`Docker images <docker>`
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53 ``jodogne/orthanc-plugins`` and ``osimis/orthanc`` also contain the
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54 plugin.
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57 Usage
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58 -----
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59
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60 .. highlight:: json
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62 Here is a minimal sample :ref:`configuration file <configuration>` to
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63 use this plugin::
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65 {
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66 "Plugins" : [
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67 "/home/user/OrthancIndexer/Build/libOrthancIndexer.so"
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68 ],
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69 "Indexer" : {
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70 "Enable" : true,
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71 "Folders" : [ "/home/user/DICOM" ], // List of folders to synchronize
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72 "Interval" : 10 // Delay between two synchronizations
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73 }
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74 }
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76 Orthanc must of course be restarted after the modification of its
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77 configuration file.
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78
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79 Once Orthanc is started, the folders are transparently synchronized
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80 without any further interaction. You can start Orthanc with the
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81 ``--verbose-plugins`` command-line option in order to monitor the
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82 synchronization process.
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84 Some remarks:
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86 * This plugin cannot be used together with other custom storage area
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87 plugins (such as :ref:`cloud object storage <object-storage>`).
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89 * Even if the folder indexer plugin is in use, you can still add other
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90 DICOM files using the :ref:`REST API <rest>` or the :ref:`DICOM
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91 network protocol <dicom-protocol>`. Such files would be stored in
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92 the ``OrthancStorage`` :ref:`usual folder <orthanc-storage-area>`.
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