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date Tue, 16 May 2017 14:54:12 +0200
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1 .. highlight:: bash
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2 .. _rest-samples:
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3
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4 Finding samples for the REST API
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5 ================================
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6
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7 * This "Orthanc Book" proposes a :ref:`number of samples showing how
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8 to use the REST API <rest>` of Orthanc.
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9 * Many working examples written in Python are `available in the source
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10 distribution
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11 <https://bitbucket.org/sjodogne/orthanc/src/default/Resources/Samples/Python/>`__.
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12 * If you cannot find an example for some feature in this manual or in
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13 the Python examples, please check the `publicly available
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14 integration tests
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15 <https://bitbucket.org/sjodogne/orthanc-tests/src/default/Tests/Tests.py>`__
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16 that span most of the REST API.
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17 * Samples for the deprecated APIs are available below.
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20
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21 Deprecated APIs
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22 ---------------
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23
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24 You will find below code snippets for APIs that have been deprecated
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25 over the releases of Orthanc. They are reproduced here for backward
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26 compatibility and should not be used in new developments.
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29 .. _deprecated-find-scu:
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30
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31 C-Find SCU (Deprecated)
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32 ^^^^^^^^^^^^^^^^^^^^^^^
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33
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34 1. Retrieve the PatientID::
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36 $ curl http://localhost:8042/modalities/pacs/find-patient -X POST -d '{"PatientName":"JOD*","PatientSex":"M"}'
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37
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38 2. Retrieve the studies of this patient (using the "PatientID" returned from Step 1)::
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40 $ curl http://localhost:8042/modalities/pacs/find-study -X POST -d '{"PatientID":"0555643F"}'
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41
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42 3. Retrieve the series of one study (using the "PatientID" from Step 1, and the "StudyInstanceUID" from Step 2)::
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44 $ curl http://localhost:8042/modalities/pacs/find-series -X POST -d '{"PatientID":"0555643F","StudyInstanceUID":"1.2.840.113704.1.111.276
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45
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46 You will have to define the modality "pacs" in the :ref:`configuration file
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47 <configuration>` of Orthanc (under the section ``DicomModalities``).
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48
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49 *Note:* This API has been superseded by the ``/modalities/.../query``
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50 URI. Please check the ``test_rest_query_retrieve`` `integration test
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51 <https://bitbucket.org/sjodogne/orthanc-tests/src/default/Tests/Tests.py>`__.
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53
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54 Using Orthanc to Ease WADO Querying (Deprecated)
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55 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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56
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57 As of Orthanc 0.6.1, it will be possible to use Orthanc to easily
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58 gather the three identifiers that are required to run a `WADO query
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59 <ftp://medical.nema.org/medical/dicom/2006/06_18pu.pdf>`__ against a
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60 remote modality (without storing the files inside Orthanc). These
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61 identifiers are:
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62
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63 * StudyInstanceUID (0020,000d),
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64 * SeriesInstanceUID (0020,000e),
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65 * ObjectUID, that exactly corresponds to the SOPInstanceUID tag
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66 (0008,0018) (cf. the `WADO specification
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67 <ftp://medical.nema.org/medical/dicom/2006/06_18pu.pdf>`__, Section
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68 8.1.4).
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69
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70 The trick consists in using the experimental C-Find SCU API, going down to the instance level::
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72 $ curl http://localhost:8042/modalities/pacs/find-patient -X POST -d '{"PatientName":"JOD*","PatientSex":"M"}'
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73 $ curl http://localhost:8042/modalities/pacs/find-study -X POST -d '{"PatientID":"0555643F"}'
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74 $ curl http://localhost:8042/modalities/pacs/find-series -X POST -d '{"PatientID":"0555643F","StudyInstanceUID":"1.2.840.113704.1.111.2768.1239195678.57"}'
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75 $ curl http://localhost:8042/modalities/pacs/find-instance -X POST -d '{"PatientID":"0555643F","StudyInstanceUID":"1.2.840.113704.1.111.2768.1239195678.57","SeriesInstanceUID":"1.3.46.670589.28.2.7.2200939417.2.13493.0.1239199523"}'
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76
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77 The first three steps are described in this :ref:`other FAQ entry
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78 <deprecated-find-scu>`. The fourth step retrieves the list of the
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79 instances of the series. The latter query was not possible until
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80 Orthanc 0.6.1. As a result of this sequence of four commands, the
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81 StudyInstanceUID, SeriesInstanceUID and SOPInstanceUID are readily
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82 available for each instance of the series.
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83
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84 *Note:* This API has been superseded by the ``/modalities/.../query``
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85 URI. Please check the ``test_rest_query_retrieve`` `integration test
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86 <https://bitbucket.org/sjodogne/orthanc-tests/src/default/Tests/Tests.py>`__.