annotate Sphinx/source/users/debian-packages.rst @ 1082:202b378001f0

java plugin in docker image
author Alain Mazy <am@orthanc.team>
date Tue, 18 Jun 2024 13:45:39 +0200
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1 .. _debian-packages:
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2 .. highlight:: bash
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3
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4
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5 Orthanc packages for Debian/Ubuntu
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6 ==================================
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7
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8 .. contents::
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9 :depth: 3
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10
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11
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12 Introduction
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13 ------------
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14
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15 Orthanc is available as an official `Debian package
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16 <https://packages.debian.org/search?keywords=orthanc&searchon=names&exact=1&suite=all&section=all>`__
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17 that is continuously updated by the Orthanc core developers in the
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18 `Debian Sid/unstable distribution
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19 <https://wiki.debian.org/DebianUnstable>`__. This implies that Orthanc
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20 is also available in the `Debian derivative distributions
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21 <https://en.wikipedia.org/wiki/List_of_Linux_distributions#Debian-based>`__,
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22 most notably in `Ubuntu
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23 <https://packages.ubuntu.com/search?keywords=orthanc&searchon=names&suite=all&section=all>`__. Most
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24 of the official plugins are also available as separate packages.
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25
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26 Note that the installed versions depend on the version of the Debian
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27 distribution. If you absolutely need the latest Orthanc version, you
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28 should:
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29
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30 * Use the bleeding-edge `Debian unstable
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31 <https://wiki.debian.org/DebianUnstable>`__, or use a Debian-based
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32 distro that derives from unstable (such as Kali Linux).
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33
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34 * Use the `LSB binaries <https://orthanc.uclouvain.be/downloads/linux-standard-base/index.html>`__.
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35
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36 * Use ``jodogne/orthanc`` :ref:`Docker images <docker>`.
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37
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38 * Use ``orthancteam/orthanc`` :ref:`Docker images <docker-orthancteam>`.
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39
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40 * :ref:`Compile Orthanc by yourself <compiling>`.
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41
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42 * Advanced users: :ref:`replace the binaries from the package by the
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43 LSB binaries <lsb-replace-debian-binaries>`.
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45
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46 **Note about backporting:** Bringing a new version of Orthanc to an
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47 older Ubuntu/Debian release (typically, a LTS release) is known as
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48 "backporting". The process for initiating a backport in `Ubuntu
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49 <https://wiki.ubuntu.com/UbuntuBackports>`__ or in `Debian
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50 <https://backports.debian.org/>`__ is publicly available, but the core
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51 developers of Orthanc will not do this packaging task by themselves
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52 because of a limited bandwidth: You are kindly invited to contribute!
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54
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55 Installation
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56 ------------
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57
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58 Prerequisite: make sure to update your package definition before installing::
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59
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60 $ sudo apt update
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61
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62 To install Orthanc and its plugins::
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63
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64 $ sudo apt install orthanc
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65 $ sudo apt install orthanc-dicomweb
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66 $ sudo apt install orthanc-gdcm
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67 $ sudo apt install orthanc-imagej
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68 $ sudo apt install orthanc-mysql
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69 $ sudo apt install orthanc-postgresql
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70 $ sudo apt install orthanc-python
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71 $ sudo apt install orthanc-webviewer
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72 $ sudo apt install orthanc-wsi
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74 Starting/Stopping the service
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75 -----------------------------
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76
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77 Once installed, Orthanc is started as a service. To start/stop/restart, use::
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78
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79 $ sudo service orthanc start
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80 $ sudo service orthanc stop
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81 $ sudo service orthanc restart
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83
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84 Accessing the logs
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85 ------------------
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86
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87 :ref:`Logs <log>` are available in ``/var/log/orthanc/``.
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89
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90 Configuration
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91 -------------
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92
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93 Orthanc reads its :ref:`configuration file
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94 <configuration>` from the ``/etc/orthanc/`` folder.
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96
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97
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98 Replacing the package from the service by the LSB binaries
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99 ----------------------------------------------------------
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100
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101 .. _lsb-replace-debian-binaries:
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102
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103 If you're stuck with an old version of Orthanc, you may try to
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104 replace the binaries by the LSB binaries. Note that there might
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105 be some inconsistencies between the plugins version and you should
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106 do that at your own risk.
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107
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108 This can be done with this sequence of commands::
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109
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110 $ sudo service orthanc stop
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111 $ sudo wget https://orthanc.uclouvain.be/downloads/linux-standard-base/orthanc/1.12.4/Orthanc --output-document /usr/sbin/Orthanc
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112 $ sudo chmod +x /usr/sbin/Orthanc
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113 $ sudo rm -f /usr/share/orthanc/plugins/*.so
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114 $ sudo wget https://orthanc.uclouvain.be/downloads/linux-standard-base/orthanc/1.12.4/libServeFolders.so --output-document /usr/share/orthanc/plugins/libServeFolders.so
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115 $ sudo wget https://orthanc.uclouvain.be/downloads/linux-standard-base/orthanc/1.12.4/libModalityWorklists.so --output-document /usr/share/orthanc/plugins/libModalityWorklists.so
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116 $
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117 $ sudo wget https://orthanc.uclouvain.be/downloads/linux-standard-base/orthanc-dicomweb/1.16/libOrthancDicomWeb.so --output-document /usr/share/orthanc/plugins/libOrthancDicomWeb.so
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118 $ ...
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119 $ sudo service orthanc restart
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120